Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01255 ATGGCCGTGAATCTAACTCAGGGTGCGATAGTAACGATGTGTTTCACAACGGAAGATTTGCACCCGGTGTTACAAGTTATCGATTTAAAGCAAGTTCAGTCGCAGCAGAATAGTGGTACTGAGAGATACCGAGTCGTTCTCTCCGATGGTTTGCATTATCAACAAGGAATGCTCGCAACACAGAAGAATGAGTTGGTTCATAATGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTTCTCAGTACATCTGTAACGATGTTCAGAATCGCAAAATTATCATCATAGTTGATTTGGATGTTATAATGGACAAATGTGACTTGATTGGAAAACCTGACCCGGCACCAAAAGAAGCACCTGCACAATCTGCTGTGAGTCATGCAGGAAATGTACAATCAGCTGCTGGTCAATTAGGAAGCACTGCTGGAAACTCACAGTATTTGAACAGTGGTTCCCATACAGGTGGTGTTAATGTTAGACCAAATGTAGCTCTGCCATCTATGGATCGCCCGGCTGTGAATCCTCCAGCTAGCAGTGTTTATTCTAACAGTTCTGGATCTGCAAGATACGGTGCATCTAATGCTCCTCCACCTTATCCTAAACCTGAGCCCGGAGTCAGTTTGAACAGACCAGCGTCAGTGAATGGGTCTTATCGTGAACAGAATTCAAGTTTCCGCAATCCACAATATGAGACTTCAAGACCAGGGCAAAATTCTTATTCTGAGAAAGCAGAAGGTACCACTATTAACTCTGCTATCAACACAACTGGACCGGGGAGCCTTCCCACTGGACAAGCTACGCCACCAGTATATAATCCTATAAACAGCAACACTAATACTGGTAGAGATTATGGGACCCCAACAAATCAAGTGAGTCAGTATGGAAACCAACATAGCAGTTCTTTTGCTTCATCAGGTGCTCCTGGTTCATATATGTCATGCAGCAATTGTGGAGGCTCTGATCATAGCTCTGCACAATGCCTACATCTTAGAAATCCACCTGAACAGTCTGCTGGGGGGGCCTACGTCAACACAGTGTCTGGTGGATCGGGTGGTGCTTCAGGTAATTGCTATAAATGCCAACAACCTGGCCATTGGGCGAAGGACTGTCCTAGTATGAGTGCAGCCAACAGGGTATCTGGTGGATCGGGTGGTGCTTCAGGTAATTGCTATAAATGCAACCAGCCTGGACATTGGGCAAGCCAATGTCCTAATATGAGTGCAGCACCTCAATCTCATGGAAACAGTAATACAGGGCAAGGAAGATATGGTATTGCTCAAAATCAGCAGTATGGAAGATAA 1299 0.4496 MAVNLTQGAIVTMCFTTEDLHPVLQVIDLKQVQSQQNSGTERYRVVLSDGLHYQQGMLATQKNELVHNGRLQKGSIVKLSQYICNDVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEAPAQSAVSHAGNVQSAAGQLGSTAGNSQYLNSGSHTGGVNVRPNVALPSMDRPAVNPPASSVYSNSSGSARYGASNAPPPYPKPEPGVSLNRPASVNGSYREQNSSFRNPQYETSRPGQNSYSEKAEGTTINSAINTTGPGSLPTGQATPPVYNPINSNTNTGRDYGTPTNQVSQYGNQHSSSFASSGAPGSYMSCSNCGGSDHSSAQCLHLRNPPEQSAGGAYVNTVSGGSGGASGNCYKCQQPGHWAKDCPSMSAANRVSGGSGGASGNCYKCNQPGHWASQCPNMSAAPQSHGNSNTGQGRYGIAQNQQYGR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01255 432 MobiDBLite consensus disorder prediction 112 243 - -
Mepo5g01255 432 Gene3D - 310 381 - -
Mepo5g01255 432 MobiDBLite consensus disorder prediction 276 301 - -
Mepo5g01255 432 FunFam Replication protein A subunit 4 115 - -
Mepo5g01255 432 SMART c2hcfinal6 355 371 IPR001878 GO:0003676|GO:0008270
Mepo5g01255 432 SMART c2hcfinal6 388 404 IPR001878 GO:0003676|GO:0008270
Mepo5g01255 432 SMART c2hcfinal6 312 328 IPR001878 GO:0003676|GO:0008270
Mepo5g01255 432 MobiDBLite consensus disorder prediction 124 156 - -
Mepo5g01255 432 SUPERFAMILY Retrovirus zinc finger-like domains 378 409 IPR036875 GO:0003676|GO:0008270
Mepo5g01255 432 Gene3D - 3 114 IPR012340 -
Mepo5g01255 432 MobiDBLite consensus disorder prediction 175 190 - -
Mepo5g01255 432 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mepo5g01255 432 CDD RPA1N 8 91 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mepo5g01255 432 MobiDBLite consensus disorder prediction 209 243 - -
Mepo5g01255 432 PANTHER RPA-RELATED PROTEIN RADX 17 129 IPR040893 GO:0003697
Mepo5g01255 432 Gene3D - 382 412 - -
Mepo5g01255 432 ProSiteProfiles Zinc finger CCHC-type profile. 356 371 IPR001878 GO:0003676|GO:0008270
Mepo5g01255 432 SUPERFAMILY Retrovirus zinc finger-like domains 342 373 IPR036875 GO:0003676|GO:0008270
Mepo5g01255 432 MobiDBLite consensus disorder prediction 403 432 - -
Mepo5g01255 432 ProSiteProfiles Zinc finger CCHC-type profile. 389 404 IPR001878 GO:0003676|GO:0008270
Mepo5g01255 432 Pfam Zinc knuckle 355 371 IPR001878 GO:0003676|GO:0008270
Mepo5g01255 432 Pfam Zinc knuckle 388 404 IPR001878 GO:0003676|GO:0008270
Mepo5g01255 432 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01255 Mepo-Chr5 12756459 12759953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01255 1 196 Core DNA Replication Machinery Family AT5G45400 37.915 6.97e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01255 K07466 - gmx:100778597 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01255 5 12756459 12759953 Mepo5g01255 5 12756459 12759953 ECH