Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01254 ATGGTTGTGAATCTGACACAAGGTGCGATAGTAAAGATGTGTTTCACATTGGAAGAATTGCACTCGGTGTTACAAGTCATCGATTTGAAGCAATGTCAGTCGCAGCAGAATAGCGCTACTGAGAGATATCGGCTCATTCTCTCCGATGGTTTGCATCATCAACAGGGAATGCTTGCTACACAGAAGAATGAGTTGGTTCATAATGGAAGGTTGCAGGAAGGTTCCATCGTTAAGCTTGCTCAGTTCATCTGTAACGATGTTCAGAATCGCAAAATTATCTTCTTTACTGAGCTGGATGTTATACTTGACAAATGGGACTTGATTGGAAAACCTGTCACTGCACCAGAACCAGAATTTGCAACTAAGGAAGATATTAAGAAGCAAGCTGAGAAGATAGACCAGTTCATTGAGATCTCCAACAAGCGGCATGAAGACGTGTTAGCAAGTCAAGCTCATATTCGGAACACCCTTGCCCAGATCTTAGCCAAACTTTCCTAA 498 0.4237 MVVNLTQGAIVKMCFTLEELHSVLQVIDLKQCQSQQNSATERYRLILSDGLHHQQGMLATQKNELVHNGRLQEGSIVKLAQFICNDVQNRKIIFFTELDVILDKWDLIGKPVTAPEPEFATKEDIKKQAEKIDQFIEISNKRHEDVLASQAHIRNTLAQILAKLS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01254 165 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mepo5g01254 165 FunFam Replication protein A subunit 4 115 - -
Mepo5g01254 165 Gene3D - 3 114 IPR012340 -
Mepo5g01254 165 PANTHER RPA-RELATED PROTEIN RADX 17 122 IPR040893 GO:0003697
Mepo5g01254 165 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Mepo5g01254 165 CDD RPA1N 23 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01254 Mepo-Chr5 12749568 12750694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01254 1 112 Core DNA Replication Machinery Family AT4G19130 44.828 1.17e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01254 K07466 - mtr:112421906 245.743