Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01243 ATGGCAGCTGATCATGGTGATAATCCTTTATCTGACAACGTTATTGTTCTACTTATTGCCATGGGTTCAGCATTATTTGTTGTTTCAATGTATCATGTCGTAGCCATTTGTTGTTGTAAACAACGTACCACCAACCCAACACAACCACCGCGGCAACCCGCGACACCGAGCCTGGAAGAAAACACATCCACATCAGTAGTAAACCTAATTCCAACACACAAGTACCATAAGAGAAATAAAGATGACGCTGTTCCGGATGACGAAGGCGGCACGTGTGCTGTGTGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAGAACTATGCCTGAGTGCTTGCACTCTTTTCATGTTTCATGTATTGACATGTGGCTTCATTCGCATTCGAATTGCCCCGTTTGTCGTTCCAGTACCGCCCCTTCACCGGTGGTGAATGGGCAGCAGCAGCACAACATAGATATGCGTCATACTAATATGGTTCCACTTGCTATCATGCAAAGTGGACTGCATCACATTATCATCATTCATTTATGGCCAATGATGGTTGTGATAATCCACAACGTTGTTGTCATGCTTATTGCCATAGGCTCAGCAGCATTTGTTGGCTCAGTGTACCATATAGTCTTTTGTTTTTGCCACAAACAACGCACCACCAATCCGCCACGGCAAGCCGCGGCACCGAGCCTTGACAAAAGCACAACCACAACAGTAGTAAACCTTATTCCGACACACAAGTACCACGAGGGAAGTAAAGTTGACGTAATTTTGGATGACGAAGGCGGCATGTGTGCCGTTTGTTTGGGTGATTTTGAGGAGGGTGATGAGTTAAGAACTATGCCTGAATGCTTGCATAGTTTTCATGTACCGTGCATTGACATGTGGCTGCATTCAAATTCAAGTTGTCCAATTTGTCGTGCTAGTGTCGCCCCTTCGCCAACGGTGAATGGGCAACATCACATCATAGATATGAGTCATATGGCTCCCCCACTTGCTATGGTGCAAAGTGGACTCGTGTGA 1014 0.4586 MAADHGDNPLSDNVIVLLIAMGSALFVVSMYHVVAICCCKQRTTNPTQPPRQPATPSLEENTSTSVVNLIPTHKYHKRNKDDAVPDDEGGTCAVCLGDFEEGEELRTMPECLHSFHVSCIDMWLHSHSNCPVCRSSTAPSPVVNGQQQHNIDMRHTNMVPLAIMQSGLHHIIIIHLWPMMVVIIHNVVVMLIAIGSAAFVGSVYHIVFCFCHKQRTTNPPRQAAAPSLDKSTTTTVVNLIPTHKYHEGSKVDVILDDEGGMCAVCLGDFEEGDELRTMPECLHSFHVPCIDMWLHSNSSCPICRASVAPSPTVNGQHHIIDMSHMAPPLAMVQSGLV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01243 337 CDD RING-H2_EL5-like 92 134 - -
Mepo5g01243 337 Pfam Ring finger domain 261 304 IPR001841 -
Mepo5g01243 337 Pfam Ring finger domain 91 134 IPR001841 -
Mepo5g01243 337 MobiDBLite consensus disorder prediction 44 66 - -
Mepo5g01243 337 SUPERFAMILY RING/U-box 80 140 - -
Mepo5g01243 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 310 IPR013083 -
Mepo5g01243 337 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Mepo5g01243 337 CDD RING-H2_EL5-like 262 304 - -
Mepo5g01243 337 SMART ring_2 262 303 IPR001841 -
Mepo5g01243 337 SMART ring_2 92 133 IPR001841 -
Mepo5g01243 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 139 IPR013083 -
Mepo5g01243 337 ProSiteProfiles Zinc finger RING-type profile. 262 304 IPR001841 -
Mepo5g01243 337 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 137 IPR044675 -
Mepo5g01243 337 SUPERFAMILY RING/U-box 256 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01243 Mepo-Chr5 12658814 12661817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01243 187 308 C3H Transcription Factor Family AT1G04360 30.000 1.09e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01243 - - mtr:11405522 213.001