Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01235 ATGGGTTTGACTGCTCTGGGAATCCCAGCATATATGTTAACTTCAACAACAAGTAAGGACAATGAGAAGTTCATATACAAAGCTTTGGAGAAGGGCGAGGGGGAACTCAAAATATTGTACGTTACTCCAGAAAAGATATCAAAAAGCAAGAGATTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTTGTAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAATTTATTTTATATGGTTAAGGAAAAGTCATCCGTCAGTAAGGTGGTCGTTGACGAGATTGCTGAATTCATTCAAGAATCTTATCCAAATCAAGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGGTCATTATCATGCAGATATGGATGTCAATGATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGTCGAGATGGGCTTCCTTCTGAATGCCTATTATACTTCAGACCTGGTGATGTCCCCCGGCAGAGCTCAATGGTCTTCTATGAAAATTCAGGACTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCGTTTTTCAGGCATTTTGCTGAGCCATTACAGGAGTGCAATGGGATGTGCGACATATGTGCATTCTCATGTGAGGTGAAGGAAGTGGATGTCTCTCGGCATGCAAAATTGATGGTTTCTTTGTTGCAAGATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTTGAAAAAATGAAAACAAAACAGAAGGAAATAGGTTCTGACTTGAAACGAGAGGAAATGGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGCTTTGAAAGAAGAATTTCAGCATACAGCTTATTCTACAAATGCTTACATTACTGTGGGGCCATTGGCGAAGCAAATTTTGCAAGGGAAGAAGACTGTGAAGCTTGAGATTTCTACAGAAGAGAAAACGAAAGCTTCTGCAAGATTGAAACGCAGCCTTGGGTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCACTCATGGAGGAATACTTCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTGCTATGTTCTCAAAAACCAAACTCACTGGAAGAGTTGGAGAAAGTAATTGGAAAATTGAAGACGGAAAAGTATGGAAATAAAATTCTTGAGCAAATTGTAAAATATTCTGATTTTGAGCCAACTGATGAACAATTAAATGATGGTAGAGCTGCAAAAAGGTCGAAGACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAGGCATGA 1671 0.4075 MGLTALGIPAYMLTSTTSKDNEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLVEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNQESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSCEVKEVDVSRHAKLMVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGSDLKREEMEQLILHLLLERALKEEFQHTAYSTNAYITVGPLAKQILQGKKTVKLEISTEEKTKASARLKRSLGSSGLELKLDELRKELSSTHGGILPHSVLSTQQISLLCSQKPNSLEELEKVIGKLKTEKYGNKILEQIVKYSDFEPTDEQLNDGRAAKRSKTKKNLVLIESSEDEA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01235 556 FunFam ATP-dependent DNA helicase 135 331 - -
Mepo5g01235 556 SUPERFAMILY HRDC-like 458 526 IPR010997 GO:0000166|GO:0044237
Mepo5g01235 556 SMART helicmild6 181 262 IPR001650 -
Mepo5g01235 556 NCBIfam RecQ family ATP-dependent DNA helicase 3 360 IPR004589 GO:0004386|GO:0006310
Mepo5g01235 556 SMART RQC_2 339 436 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mepo5g01235 556 Pfam RQC domain 336 440 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mepo5g01235 556 Pfam RecQ zinc-binding 274 330 IPR032284 -
Mepo5g01235 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 278 IPR027417 -
Mepo5g01235 556 Gene3D - 1 134 IPR027417 -
Mepo5g01235 556 Pfam HRDC domain 458 517 IPR002121 GO:0003676
Mepo5g01235 556 Gene3D - 335 436 IPR036388 -
Mepo5g01235 556 Gene3D - 135 331 IPR027417 -
Mepo5g01235 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 127 IPR014001 -
Mepo5g01235 556 CDD SF2_C_RecQ 135 271 - -
Mepo5g01235 556 Gene3D HRDC domain 453 521 IPR044876 -
Mepo5g01235 556 FunFam ATP-dependent DNA helicase 453 523 - -
Mepo5g01235 556 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 513 - -
Mepo5g01235 556 FunFam ATP-dependent DNA helicase 335 435 - -
Mepo5g01235 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 152 301 IPR001650 -
Mepo5g01235 556 ProSiteProfiles Pumilio RNA-binding repeat profile. 497 533 IPR001313 GO:0003723
Mepo5g01235 556 Pfam Helicase conserved C-terminal domain 159 261 IPR001650 -
Mepo5g01235 556 ProSiteProfiles HRDC domain profile. 449 528 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01235 Mepo-Chr5 12541660 12553940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01235 170 276 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 1.37e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01235 K10899 - gmx:100817635 949.503