Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01210 ATGGGGTCTAGTAGCAGCAAAACCAGCTCTTCTTGTAGCTCTTCATCTTCTTCTTGCAGTTTAAGAAAAGGTCGATCCAAACGGTATAAAGGTTTTCCTTCTTATTGTCTTGGAACAACTTCTGGATCTCGTGACAGTGATAATGATGACCAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGATACATACACCAGCAGCAATGAAATTGACTCGGATGAAGTGAAATCAGAGTCTTTCAAAAAAGTTAAACCTGAAGAAATACCTTGTATGCCTTCTAACATTGATCTTGATGAGTGGAGTCGCACTGAATCCAGAACCGCTAGCAGCTCTGCACATGGTTCTTCAACTCAGTCCACAAACCCTGCAAGTCGTTTCCTTTCTCGTTTTAGTATCATTCCGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTAGGGTCATCTCGACCTTGTCCTGTTTCATCGGCAAGTCTTTCGATATTTAACAATGAAGATGAGCTTAGTCTGCATCCACGGCCTCATGGAAGTTTGACTAATAGAAATGAAACTCAACAATGTAGTGACTTGCTTAATGCGTCTTTTGTTAATCGAGTCCCTATAGAGAACCATGAAAATACTTCTAATAATTTAAGTTCAAATGTCCCGACATTCGGTTTGGATCGCAACTTGTCGAGTCCAATGCTGTCTCCTATCCAAGATATGGTTAGAGATGGATATGCTACGCGAGACATGCCTGGTGTGAACATGTTTTCTCCAAGAATTCATAATGAGACAGGAAATGCTGAGACTAGACATATAGATAGACGAAATGGAGCCCGAGAACCTGTTGATCGTAATGTTCGTTTCAGCCGAACTTTAAGTGTCGGAAGGCTTCGTGATAGAGTTCACCGCCGATCAGGATTGGCTGACTTCAACTTTTGCCCTCTGCAACAAGAGAGAGAACTGAGAGATGCTAGTGAGGATAATGGAAGACAAGTAGGGGAGAGGGGTACAAGAGTGTCACCATCTGATCGTAATGCTTTAAATTCTCATACTACATCCAGATATCCTTTACCAAACATATCTAGCTCTCCGCTTACCACCCAAGACTATGAGGTCGAGGCTTCAAGGTCAAGAGAAACTAGATATCAGGATCTACTGGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTACATGCAGATTAACTAGTCGCGATAACAATTCAAATTCAAATGATGATACAAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTATCTTCTATCGGATCTGTTCCTGCACCTGCCGAAGTTGTCGAATCCTTACCTGTCAAATTATACACAAAGTTGCAAAAACATCAAGAAGAGCCTGTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGCGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAAGAGGTTCACAGGGTATGTCCACTATGTCGGGGAGACATTTGTATATCAGATTCACTACCAACAGAGAACTAA 1722 0.4175 MGSSSSKTSSSCSSSSSSCSLRKGRSKRYKGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGSDDTYTSSNEIDSDEVKSESFKKVKPEEIPCMPSNIDLDEWSRTESRTASSSAHGSSTQSTNPASRFLSRFSIIPGNISFRLSRTTSLGSSRPCPVSSASLSIFNNEDELSLHPRPHGSLTNRNETQQCSDLLNASFVNRVPIENHENTSNNLSSNVPTFGLDRNLSSPMLSPIQDMVRDGYATRDMPGVNMFSPRIHNETGNAETRHIDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFNFCPLQQERELRDASEDNGRQVGERGTRVSPSDRNALNSHTTSRYPLPNISSSPLTTQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRLTSRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKLQKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEVHRVCPLCRGDICISDSLPTEN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01210 573 FunFam Putative RING zinc finger domain superfamily protein 487 565 - -
Mepo5g01210 573 MobiDBLite consensus disorder prediction 338 366 - -
Mepo5g01210 573 MobiDBLite consensus disorder prediction 53 67 - -
Mepo5g01210 573 MobiDBLite consensus disorder prediction 1 22 - -
Mepo5g01210 573 MobiDBLite consensus disorder prediction 1 123 - -
Mepo5g01210 573 MobiDBLite consensus disorder prediction 70 86 - -
Mepo5g01210 573 MobiDBLite consensus disorder prediction 105 123 - -
Mepo5g01210 573 Pfam Ring finger domain 517 560 IPR001841 -
Mepo5g01210 573 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 572 - -
Mepo5g01210 573 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Mepo5g01210 573 SMART ring_2 518 559 IPR001841 -
Mepo5g01210 573 SUPERFAMILY RING/U-box 497 566 - -
Mepo5g01210 573 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Mepo5g01210 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 564 IPR013083 -
Mepo5g01210 573 MobiDBLite consensus disorder prediction 318 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01210 Mepo-Chr5 12301247 12305878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01210 45 567 C3H Transcription Factor Family AT5G45290 46.324 2.61e-116 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01210 - - gmx:100815830 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01210 5 12301247 12305878 Mepo5g01210 5 12301247 12305878 ECH
Mepo5g01210 5 12301247 12305878 Mepo1g02305 1 23802748 23806845 PCT