Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01178 ATGCCGGCATGTGATACAGGCACATGCTATGATCCACATTGCATTTCACTTCCTCGCTTTCAGAGTAAAGTTGACATATTGGTAGCAACCCCTGGTAGGCTTATGGATCACATTAATACTACCATAGGCTTCACGCTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGATTGCTTCGTGAGGCATACCAATCATGGTTGCCTACTGTGCTTGATCTGATCCAATCTAATGATGATGGTTTTTCCCAATCTGGAGTTGAGAGGGGGTTCAAGGACAAGCCTTATCCCAGGCTGGCAAAGATGGTTCTATCTGCGACATTAACTCAGGATCCAGGCAGACTTATTCAGCTTAATTTGCACCGCCCTTTACTATTGAAAGCTGGACAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTATAAACTGATTTGTGAAAAAATGGTCAAGCCTTCATATTTAATCGCCCTTTTGAAATCCCTGGGAGAAGAAAAGTGCCTGGTTTTTACAAAATCTGTGGATTCAACACATCGTCTCTGCCAATTGCTAAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTACAACATCAACGAGTAAGAAGCAAGACATTGAACGAATTCCGTAAAGGAGTGTTTCAAGTGCTTGTATCTTCTGATGCATTGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACGTGCCCAAATTCATAAAAACTTATGTTCATCGGGCGGGCAGGACTGCAAGAGCTGGCCAGATTGGGCGTTGCTTCACATTGATGTCAGAAGATGAGGTTCGACGATTTAAGAAGTTATTGCGAAAGGCTGAGGGTAGTTCTTGTCTGGACCATATTGTTCCGTCCAGTCAAATTGAAGCACTCAATACTACCTACCAATCAGCACTGACAAAATACAAGGAGATAATTTCGAAGACACGAAAGAAACCCAAGAATTAG 990 0.4162 MPACDTGTCYDPHCISLPRFQSKVDILVATPGRLMDHINTTIGFTLEHLYYLVVDETDRLLREAYQSWLPTVLDLIQSNDDGFSQSGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHRPLLLKAGQMRYRLPENLESYKLICEKMVKPSYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFEDLQIDIKEYSGLQHQRVRSKTLNEFRKGVFQVLVSSDALTRGMDVEGVRNVINYDVPKFIKTYVHRAGRTARAGQIGRCFTLMSEDEVRRFKKLLRKAEGSSCLDHIVPSSQIEALNTTYQSALTKYKEIISKTRKKPKN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01178 329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 155 305 IPR001650 -
Mepo5g01178 329 PANTHER RNA HELICASE 23 304 - -
Mepo5g01178 329 SMART helicmild6 182 263 IPR001650 -
Mepo5g01178 329 Pfam DEAD/DEAH box helicase 20 113 IPR011545 GO:0003676|GO:0005524
Mepo5g01178 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 284 IPR027417 -
Mepo5g01178 329 Gene3D - 13 130 IPR027417 -
Mepo5g01178 329 CDD SF2_C_DEAD 140 271 - -
Mepo5g01178 329 Gene3D - 137 329 IPR027417 -
Mepo5g01178 329 Pfam Helicase conserved C-terminal domain 152 263 IPR001650 -
Mepo5g01178 329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 127 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01178 Mepo-Chr5 11971422 11977911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01178 20 278 Eukaryotic Initiation Factors Gene Family AT3G13920 24.436 4.71e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01178 K14807 - cit:102616133 446.432