Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01136 ATGAGTGATACAAAAGAAAACAACGAAGTGGGTCAGGGTGTTCCGGCGAATGTTAATGTAGAGGAAGCTGACTATGTCATTGTTGAAAATGAAAATTCAAATCAAGCTTCAACTAGTCCACAATTAGGAGATGATCATGAGATGATTATTGATAATCTTGCTGGTTTGGATTCATATCTTGATCAAGAGATGCATCTTGAAGTTCAACCAGTTACTGTAGAGGAAACTTCAAAGAATTTTGAAAATGTGTCAAATGATGTTAAAATTGGGAAGGACGAGGTGCATGCTGAGGATGAAATTGTGAAACCCAAGGTTGTTTCAGAAGGTGTTTCACAAGAAAATGTTCAAGATACCCTTCATTCGGTTCCAGTTGAGGCGGATGATGCTCATATTTTGGATACAGCTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGACGCCCAAAAACTTCCTCCGAGTAGTAACGGTGTTGAGAATGAAGATATTGCATGTCAAAATAATGTTAGTGATGGTGATGTGAAGGTGGACGCCCAAAAACTTCCTCCGAGTAGTAACGGTGTTGAGAATGAAGATATTGCATGTCAAAATAATGGTGATGTTGAAATGATAGCGGCGGAGGTTGAGGTGAAGCCTGAAGTCTGTGAAGCGGCTGTTAGTAAAGCTTGTGATGTTGAACCTATATCGTTGAGTAATAACAATCCTACTACACCACTACCTGCCTTTTCTGATGCAAATGAACCTATACTGTCAAATCATAATGATCCTACTACACCACAACCTGCCCCTGATGATACAAAGCCAGGAATCAAGAATGTTTTAGAAGTTGAAAGTAAGGATGGTGAAGAGCAAGTTGCTGAGCCTGTAGATAATGAAAACCCAGATTCGCCGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGATGGAAATGAGTCGGGAACCGAAGAGGACCAATCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGACTTCAAGCCTCCCAAATTTTATGGAGAATGGCTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGATTGGGAGGCTATGAGAAGGTAACCTCATGTAAGTTGTGGCGGAGTGTGGGAGAGTCTTTCAAACCCCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCATAACATAAAAGGCGGCGAGCTGAATGTACCTATCACATCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGGTTTAGCATCAGGTAGATCCCGGAGATATGCTGCTGAACAGGCTATGCGGGGTTGGCACTCGCAACGTCTTCTTGGAAATGGTGAAGTTGGTGACCCTATTATAAAGGATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATGAATGTACCTAAACGTAAGAGCCCATCTTATATGGATAATGCAGTCAAAGCAGCACGGAGTAAACCGTCAAGACCACAGTCGGGAACAGCTGTGGTTGACATAGGACCTTCTGCTGATTGGGTAAAAGTCAATGTTCAAAAAACTAAAGATTGTTTCGAAATATATGCTTTAGTTCCTGGCCTTCTGCGGGAGGAGGTACGAGTTCAATCAGACCCAGCAGGACGTTTGGTCATAAGCGGTGAGCCTGAGCATCCCAATAATCCTTGGGGCGTGACACCTTTCAAAAAGGTTGTGAGTTTACCCTCAAGAATTGACCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAACTGTTTGTCCGTGTCCCATTTGAACAGTCCGAATAA 1833 0.4288 MSDTKENNEVGQGVPANVNVEEADYVIVENENSNQASTSPQLGDDHEMIIDNLAGLDSYLDQEMHLEVQPVTVEETSKNFENVSNDVKIGKDEVHAEDEIVKPKVVSEGVSQENVQDTLHSVPVEADDAHILDTAEGEDASDVKVDAQKLPPSSNGVENEDIACQNNVSDGDVKVDAQKLPPSSNGVENEDIACQNNGDVEMIAAEVEVKPEVCEAAVSKACDVEPISLSNNNPTTPLPAFSDANEPILSNHNDPTTPQPAPDDTKPGIKNVLEVESKDGEEQVAEPVDNENPDSPQNMFFLDADHYYDGNESGTEEDQSAFMKELENFFRERSMDFKPPKFYGEWLNCLKLWRAVMRLGGYEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPITSPPEPVNVENQGLASGRSRRYAAEQAMRGWHSQRLLGNGEVGDPIIKDRNAVSVQKREKQLKSMNVPKRKSPSYMDNAVKAARSKPSRPQSGTAVVDIGPSADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01136 610 Pfam Hsp20/alpha crystallin family 527 609 IPR002068 -
Mepo5g01136 610 SUPERFAMILY ARID-like 309 418 IPR036431 GO:0003677
Mepo5g01136 610 CDD ARID 318 403 - -
Mepo5g01136 610 Pfam ARID/BRIGHT DNA binding domain 319 403 IPR001606 GO:0003677
Mepo5g01136 610 ProSiteProfiles ARID domain profile. 316 407 IPR001606 GO:0003677
Mepo5g01136 610 FunFam AT-rich interactive domain-containing protein 3 316 415 - -
Mepo5g01136 610 SMART ARID_2 313 403 - -
Mepo5g01136 610 MobiDBLite consensus disorder prediction 228 268 - -
Mepo5g01136 610 Gene3D - 510 610 IPR008978 -
Mepo5g01136 610 SUPERFAMILY HSP20-like chaperones 518 606 IPR008978 -
Mepo5g01136 610 CDD ACD_sHsps-like 525 605 - -
Mepo5g01136 610 SMART bright_3 317 408 IPR001606 GO:0003677
Mepo5g01136 610 MobiDBLite consensus disorder prediction 228 259 - -
Mepo5g01136 610 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 164 609 IPR045147 GO:0006357
Mepo5g01136 610 Gene3D - 316 413 IPR036431 GO:0003677
Mepo5g01136 610 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 510 610 IPR002068 -
Mepo5g01136 610 FunFam AT-rich interactive domain-containing protein 3 502 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01136 Mepo-Chr5 11477073 11484092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01136 311 608 ARID Transcription Factor Family AT1G76510 62.046 8.94e-126 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo5g01136 HSP20 2.7e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01136 - - psat:127119953 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01136 5 11477073 11484092 Mepo5g01136 5 11477073 11484092 ECH