Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01122 ATGACTCGACCGCTGAGAATTCTCCTTTCAATGGAAACCACGCCCACCACCGTAGTGGTGGCGCCGCCACCGGAAGCCGTAGCTATAGAATCAGATTTCGTTGTAATTCTCGCAGCTTTACTCTGTGCTTTAATATGCGTTGTCGGACTCATCGCCGTCGCTCGTTGCGCTTGGCTCCGACGAGACTCCGGCGCCGGAAACTCACCTCAACAAGCTTTAGCCAACAAAGGACTCAAGAAAAAAGTTCTACAATCACTTCCCAAATTCTCTTACGTCGATAGCAACCCTGGAAAATGGTTAGCAACAACGGAATGCGCGATTTGCTTATCGGATTTCGCCGCCGGCGATGAGATCCGTGTGCTACCACAGTGTGGACATGGCTTTCACGTTGCTTGCATAGATACATGGCTTGGGTCACACTCGTCTTGTCCTTCTTGTAGGCAGATTCTGGCGGTGACGAGGTGTCAGAAGTGTGGTAGGTTTCCGGCGAACGGAGGTGAAGTTACCGGAGTTGCGGTTAGTGAACCGGAGATGAAAGGTAGAGAAGATGGCAATGTCGGTGCAAATAGTAATAGTGGGGGTGTTAGTAGTTGTAGTAATAACTCTGCACATCACAATCATAGTGGAAACAATGGGTTCTTGCCTTAA 648 0.4954 MTRPLRILLSMETTPTTVVVAPPPEAVAIESDFVVILAALLCALICVVGLIAVARCAWLRRDSGAGNSPQQALANKGLKKKVLQSLPKFSYVDSNPGKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPANGGEVTGVAVSEPEMKGREDGNVGANSNSGGVSSCSNNSAHHNHSGNNGFLP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01122 215 CDD RING-H2_EL5-like 104 147 - -
Mepo5g01122 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Mepo5g01122 215 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Mepo5g01122 215 Pfam Ring finger domain 104 147 IPR001841 -
Mepo5g01122 215 SMART ring_2 105 146 IPR001841 -
Mepo5g01122 215 SUPERFAMILY RING/U-box 84 152 - -
Mepo5g01122 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 26 159 - -
Mepo5g01122 215 FunFam E3 ubiquitin-protein ligase ATL6 67 153 - -
Mepo5g01122 215 MobiDBLite consensus disorder prediction 172 215 - -
Mepo5g01122 215 MobiDBLite consensus disorder prediction 185 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01122 Mepo-Chr5 11322640 11323669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01122 1 184 C3H Transcription Factor Family AT1G76410 58.854 2.04e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01122 - - gmx:100787383 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01122 5 11322640 11323669 Mepo5g01122 5 11322640 11323669 ECH
Mepo5g01122 5 11322640 11323669 Mepo1g02258 1 23244412 23245398 PCT