Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01116 ATGAGTATTGTTTCTTGGTTGATAAAAAATCAAGTTTTGGTTTCAGGGACTAATGTGATCTGTCGGGGTAGTAACAAAGTTGTCAAAAGAGGAAGTTTGCTTTGCGATGGTATAGTTTGTGATTGTTGTCGTGTTACCTTTACTATCACCGGGTTCGAGTCTCATGCTTGTTGTACAAGACATAGACCATCCACTAGTATCTTGTTGGAAGATGGAAGGTCGTTGTTGGATTGTCAAAAGGAAGCTCTGAGTTCGCGTGATCATAAAGGGAATCATTTTGCTGTCAAAGAAAAATCTGAAGCAAATAATGATAATGTTTGTCCTATTTGTGGTTTTGGAGGTGACTTAGCACTATGTGATCGATGTCCTTCTGCATTCCATCTCGGTTGTTTAGGTCTCAATCGAGTTCCAATTGGTGACTGGTTCTGTCCAACTTGTTGCTGCAAAATATGCTATCGACCCAAATGCAAACAAGAATGTAAAGATCATAAGGATAACAATATTCTTGTTTGTGTTCAATGTGAGCAAAAATATCACTTTGGATGCGTAAAGGCTGTAGGAATTGAATTTAATCACATGGAGAATTGGTTTTGCAGTGTGGTTTGTGGGAACATGTTCTTATGTCTAAAGAAGTTGTTAGGAAAACCAATCATGGTTGCAGATAATCTAACATGGACATTGGTGAAGAATGTGAATAGTGTTGATGAAGAGGAGTTTAATCAAAAGGAGAATCACCAATTTGGTTCTCAAAGTTATAGTTCTCTGACAATTTAG 774 0.3747 MSIVSWLIKNQVLVSGTNVICRGSNKVVKRGSLLCDGIVCDCCRVTFTITGFESHACCTRHRPSTSILLEDGRSLLDCQKEALSSRDHKGNHFAVKEKSEANNDNVCPICGFGGDLALCDRCPSAFHLGCLGLNRVPIGDWFCPTCCCKICYRPKCKQECKDHKDNNILVCVQCEQKYHFGCVKAVGIEFNHMENWFCSVVCGNMFLCLKKLLGKPIMVADNLTWTLVKNVNSVDEEEFNQKENHQFGSQSYSSLTI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01116 257 Pfam Tify domain binding domain 31 82 IPR032308 -
Mepo5g01116 257 PANTHER PHD FINGER PROTEIN 12 3 253 IPR042163 GO:0003714|GO:0045892
Mepo5g01116 257 ProSiteProfiles Zinc finger PHD-type profile. 104 149 IPR019787 -
Mepo5g01116 257 SUPERFAMILY FYVE/PHD zinc finger 95 148 IPR011011 -
Mepo5g01116 257 SMART PHD_3 155 202 IPR001965 -
Mepo5g01116 257 SMART PHD_3 106 147 IPR001965 -
Mepo5g01116 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01116 Mepo-Chr5 11154317 11155817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01116 2 232 PHD Transcription Factor Family AT5G58610 42.259 1.15e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo5g01116 TDBD 6.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01116 - - mtr:11405488 479.944