Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01088 ATGAAGATCCCCCAGAACTACCGTGACGAGGTAGTACAAGCTGCGTTTAAACATAATGAGCTTTTAAAAGTCCTAAAAGATATCAAGGATCAAAGAATTTATACAAGAGGTGCTGCGGCAAGAGTCAAGGAGCTGCTTAAAGGGCATACTAATTTAATTTTGGGATTCAACACCTTCCTGCCAAAGGAACATCAAATCAAACTTGAGACCACTGTCTCTTGTTTTACGCAAGCATTGGAAAGGATGGATGATAATTCTTCCCGAGCATCTATGGGGATGTAA 282 0.4043 MKIPQNYRDEVVQAAFKHNELLKVLKDIKDQRIYTRGAAARVKELLKGHTNLILGFNTFLPKEHQIKLETTVSCFTQALERMDDNSSRASMGM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01088 93 Gene3D Paired amphipathic helix 2 61 IPR036600 GO:0006355
Mepo5g01088 93 PANTHER SIN3B-RELATED 17 70 IPR039774 GO:0003714
Mepo5g01088 93 SUPERFAMILY PAH2 domain 16 63 IPR036600 GO:0006355
Mepo5g01088 93 Pfam Paired amphipathic helix repeat 19 60 IPR003822 GO:0006355
Mepo5g01088 93 ProSiteProfiles PAH domain profile. 1 63 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01088 Mepo-Chr5 10896425 10897155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01088 17 68 WRKY Transcription Factor Family AT4G12020 51.923 7.00e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo5g01088 PAH 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01088 K11644 - aly:9309770 73.9442