Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01077 ATGGGAGGTGACGCAACCGCTGAAACCACCACGGAGTCACAATCCACTGACGGAGGAGTTAAGATCAACATTCGTTGTTCCAATGGTTCCAAATTTTCCGTTCAGATTAGCCTCGATTCCACCGTTGTTTCCTTCAAGGATGTTATTGCTCAGAACTGCGATATCTCTGCTGATCAACAACGTTTGATTTATAAGGGAAGGATTCTTAAGGATGATCAAACGCTTCAAAGCTATGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTCAACCTGCCAATACAACTGGTGGGGCTAATACCACTGGTGCCAATACCACCACTACTAATGCTAGAGCTGCTGGTGCTAATGATGGTGGGGGATTAGGAGGACCTGGACTTGGAGCTTCACTGTTTCCAGGACTAGGAGGTATCAATGGAATGGGAGGAGGTGGTGGCCTCAATAGTTTATTTGGAGCAGGGCCTCCAGATCTTGAACAATTGCAGCAACCATTTATGTCAAATCCCAATTTAGTTAGAGAAATAATGAACTCTCCTGCCATGCAAAATTTATTAAATAATCCCGAGATAGTGCGCAATCTTCTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCTAGCACACTTCGCCAGACACTTGAGGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAATATTGAATCTTCTCCTGAGGGGTTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCAGGAAATGACAGTTCCAGAATTTTGGGGACTCAAGGTGGACAAACGAGGAATCCATCGACCAATCCCTCAACTACTAATGCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTCCAACTGGAGGTGCCCAAACTAATGTCAGGAGATCAACACCTACTGCTGCAGATGCTCGGCAGCAGACACCCACTGGCTTAGGCGGGCTTGGTATGCCAGATCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGTTCATTGACCCAATTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATCATGTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAATACTGATCAGCGTGGGATGCCTGATATGAATTCAATGAGAGAAGTGATGCAAAACCCGGAGTTTCTTCGAATGTTTTCCTCACCTGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTCATGACTCAACTTGGACAGCAGCAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGACCAGGGAACAACTTGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCTCCAGAGACATTGTATGCTACCCAGCTTACCCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACTTAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCGGTTGAGCGGCTTTTGGGAAACTCTGGACAGTAG 1629 0.4586 MGGDATAETTTESQSTDGGVKINIRCSNGSKFSVQISLDSTVVSFKDVIAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFQPANTTGGANTTGANTTTTNARAAGANDGGGLGGPGLGASLFPGLGGINGMGGGGGLNSLFGAGPPDLEQLQQPFMSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNDSSRILGTQGGQTRNPSTNPSTTNAEATSPVPNTNPLPNPWSSAPTGGAQTNVRRSTPTAADARQQTPTGLGGLGMPDLEGMLGGMPDAGSLTQLMQNPAISQMMQSIMSNPQTMNQILGMNTDQRGMPDMNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGTGPGNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPETLYATQLTQLQEMGFFDTQENLRALIATSGNVHAAVERLLGNSGQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01077 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Mepo5g01077 542 MobiDBLite consensus disorder prediction 445 465 - -
Mepo5g01077 542 PANTHER UBIQUILIN 15 537 IPR015496 -
Mepo5g01077 542 MobiDBLite consensus disorder prediction 278 312 - -
Mepo5g01077 542 SMART ubq_7 20 91 IPR000626 GO:0005515
Mepo5g01077 542 MobiDBLite consensus disorder prediction 320 346 - -
Mepo5g01077 542 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Mepo5g01077 542 Pfam Ubiquitin family 22 90 IPR000626 GO:0005515
Mepo5g01077 542 Gene3D - 196 253 - -
Mepo5g01077 542 Gene3D - 482 542 - -
Mepo5g01077 542 FunFam Ubiquitin domain-containing protein DSK2b 483 541 - -
Mepo5g01077 542 SUPERFAMILY Ubiquitin-like 11 105 IPR029071 -
Mepo5g01077 542 CDD UBA_PLICs 500 538 - -
Mepo5g01077 542 CDD Ubl_Dsk2p_like 20 92 - -
Mepo5g01077 542 MobiDBLite consensus disorder prediction 445 468 - -
Mepo5g01077 542 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Mepo5g01077 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Mepo5g01077 542 Gene3D - 6 103 - -
Mepo5g01077 542 SMART uba_6 500 538 IPR015940 -
Mepo5g01077 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Mepo5g01077 542 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Mepo5g01077 542 SMART CBM 200 239 IPR006636 -
Mepo5g01077 542 SMART CBM 401 436 IPR006636 -
Mepo5g01077 542 SMART CBM 146 187 IPR006636 -
Mepo5g01077 542 SMART CBM 356 398 IPR006636 -
Mepo5g01077 542 MobiDBLite consensus disorder prediction 278 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01077 Mepo-Chr5 10696680 10703107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01077 20 89 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 31.429 1.10e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01077 K04523 - gmx:100797539 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01077 5 10696680 10703107 Mepo5g01077 5 10696680 10703107 ECH
Mepo5g01077 5 10696680 10703107 Mepo1g02219 1 22850055 22856261 PCT