Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01057 ATGGATGATTCTCCAGTAAGAAGGCTTTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCAAGGTCTCGGTCCAGGTCTCAGTCAGGATCCCCTGAAATGCACAGGCCCAGGTCTCTGTCAAGGTCGCCTGAAATGCAAAGGCCTAGGTCGAGGTCTCCTGAAATGCAAAGGCCTAGGTCTCTGTCAAGGTCTCCTGAAATGCAAAGGCCTAGGTCACGGTCAAGATCTCTTGAAAAGCAAAGGCCTCCGTCTCAGTCAAGGTCTCGTGAAATGCAAAGGCCTAGGTCTCGGTCAAGATCTCTTGAGAGGCAAAGGCCTAGAACCCCCTCGAGAAGTCGTGGCAGATCAAGATCAAGAAGTCCTGACAGAAATGGTGGGGACACTCTTTATGTGACTGGTCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGGAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATATCTCGAGGTTTTGCTTTTGTCACCATGGATACTGCTGAGGATGCAAACCGCTGTATCAAGTACCTCAATCAATCCATTTTAGAGGGTCGCTATATCACTGTTGAGCGGGTTTTGTGCTTACATTCAGAATGCATTGCATCAGCTATGTTGGCAGCAATCAAAGATGATCAGTTCATCCATGTCAACTTTAGTGAAACAACTTGA 708 0.4845 MDDSPVRRLSRSPSPWRAQSRSRSRSRSQSGSPEMHRPRSLSRSPEMQRPRSRSPEMQRPRSLSRSPEMQRPRSRSRSLEKQRPPSQSRSREMQRPRSRSRSLERQRPRTPSRSRGRSRSRSPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYLNQSILEGRYITVERVLCLHSECIASAMLAAIKDDQFIHVNFSETT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01057 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Mepo5g01057 235 MobiDBLite consensus disorder prediction 1 132 - -
Mepo5g01057 235 SMART rrm1_1 130 203 IPR000504 GO:0003723
Mepo5g01057 235 MobiDBLite consensus disorder prediction 39 58 - -
Mepo5g01057 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 203 IPR000504 GO:0003723
Mepo5g01057 235 MobiDBLite consensus disorder prediction 66 124 - -
Mepo5g01057 235 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 118 204 - -
Mepo5g01057 235 Gene3D - 62 206 IPR012677 -
Mepo5g01057 235 SUPERFAMILY RNA-binding domain, RBD 101 204 IPR035979 GO:0003676
Mepo5g01057 235 MobiDBLite consensus disorder prediction 13 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01057 Mepo-Chr5 10355801 10357361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01057 125 202 Eukaryotic Initiation Factors Gene Family AT1G49760 37.179 9.33e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01057 K12897 - gmx:100527350 195.282