Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01044 ATGGATTTTGTACCAAATCCATGTCCTTCTCGTTCTTCTTTGTTCGGTTCTTTTGGGAATTTTGTTGACAAAGTTAAACAATTTGGTACCCTAGCAATTTCTGTTATCATTGGAAACATTTTCTCTGCGATCTTGACCTTCTGTTTTGCATTAGTTGGAACATTATTGGGTGCTTTGACAGGAGCTTTGATAGGTCAAGAGACCGAAAGCGGTTTCATTCGAGGTGCCGCTGTTGGTGCTATATCAGGAGCCGTTTTTTCCATTGAAGTTTTTGAATCATCTCTTGTTCTTTGGCATTCTGATGAATCTGGAATTGGTTGTCTTTTATACTTGATTGATGTTATTGTTAGCCTCTTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCTGCAATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAATCAAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGTGGTTCCAAAGGGTTATCCGGAGATTCGGTTTCGAAGATCCCAAAAATCAAAATCACTGCTGACAATATTGAGGCATCAGGGGAGAAAGTTTCTTGTTCAGTTTGTCTCCAGGATTTTCAACTTGGAGAGACAGTTAGAAGTCTACCTCATTGTCATCACATGTTTCATCTACCTTGCATAGATATGTGGCTTTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 705 0.4043 MDFVPNPCPSRSSLFGSFGNFVDKVKQFGTLAISVIIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVESSFDEVQNIFDIGGSKGLSGDSVSKIPKIKITADNIEASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01044 234 Pfam YMGG-like Gly-zipper 49 84 IPR027367 -
Mepo5g01044 234 FunFam NEP1-interacting protein-like 1 150 234 - -
Mepo5g01044 234 CDD RING-H2_NIPL1-like 188 231 - -
Mepo5g01044 234 Pfam Ring finger domain 188 231 IPR001841 -
Mepo5g01044 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 233 IPR044523 -
Mepo5g01044 234 SMART ring_2 189 230 IPR001841 -
Mepo5g01044 234 SUPERFAMILY RING/U-box 183 234 - -
Mepo5g01044 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 234 IPR013083 -
Mepo5g01044 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01044 Mepo-Chr5 10252969 10254755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01044 22 234 C3H Transcription Factor Family AT5G66070 76.995 1.36e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01044 - - lja:Lj2g3v1670720.1 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01044 5 10252969 10254755 Mepo1g02177 1 22344024 22346452 PCT