Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01033 ATGACACTCAAAGGCTTTGTATCACTTATCTTCAATTTAATTGGCCTGGCAGAAACCCAAACAAACAATGATGCAATTTTACCTTACATTGTTGCCACCTCAATTGTCCCAAACAAGACCAATCAACAATCATCAGAATCTTCAACAACAACAAATGATGTTGGTTTGTGTTGTGTATGCTTGTCAATGTTAAACAACAAAGATGAAATTCGTGTGCTTCCTTGTTCACACGAATTTCACAAGGTTTGTGTAAATAGTTGGCTAAATGGTCATCATAAAACATGTCCATTGTGTCGTTTTCCAATGGAAGGTGAAGAAAAGTCTCATCATCGTGGTGAAATGTTTAGTGAAGAGATGCTAATATGGTTTTCTTCTTTTCATATAGCTGGTATGTAA 396 0.3561 MTLKGFVSLIFNLIGLAETQTNNDAILPYIVATSIVPNKTNQQSSESSTTTNDVGLCCVCLSMLNNKDEIRVLPCSHEFHKVCVNSWLNGHHKTCPLCRFPMEGEEKSHHRGEMFSEEMLIWFSSFHIAGM 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01033 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 104 IPR013083 -
Mepo5g01033 131 Pfam Ring finger domain 57 99 IPR001841 -
Mepo5g01033 131 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Mepo5g01033 131 SUPERFAMILY RING/U-box 38 102 - -
Mepo5g01033 131 PANTHER TARGET OF ERK KINASE MPK-1 38 107 - -
Mepo5g01033 131 SMART ring_2 57 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01033 Mepo-Chr5 10164234 10164913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01033 47 99 C3H Transcription Factor Family AT5G45290 46.296 8.81e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01033 - - gmx:100809233 173.711