Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00973 ATGTCTTCTTCCGGAGAAGTTGATGATGTTGCTCCCGTCGTTGAAATGCCGGTGGAGCCTAAACCTGTGAAGGAAATGAAACCAAAAGCTTCACAAGAGAAGAAGGCTAAACAAACCAAAACACCTTCACATCCTCCATATTTTGAGATGGTTAAGGAGGGTTTACTGGCTTTGAAGGAGAGGAATGGTTCAAGCCCTTACGCAATAGCGAAATACATGGAAGAGAAGTTCAAGCCGGTGCTCCCAGCGAATTTCAAGAAGATACTAAGCTTGCAGCTTAAGAATCAAACCAGGAGAGGGAAGCTGGTGAAGATCAAAGCTTCGTATAAACTATCTGATGCCGAGAAGCCGAAGAAGGAGAAAAAGAACACCCCGAAAGCTAAGAAGCAACAAAACCAGAAGAGGAAGAGAAATGGAAGTCTTGGTGGTAAGAAGAGTAATAAGAAAAAGGAGATGGTTAAGAAGGTTGTGAATGAGAAGAAGAGTAAGGTGTCTGGGTCTGCAAAGCCCAAACAACCCAAGTCCATTAAGTCTACTACTAATAAGATAATAATGACCGAAACTATGTAA 570 0.4228 MSSSGEVDDVAPVVEMPVEPKPVKEMKPKASQEKKAKQTKTPSHPPYFEMVKEGLLALKERNGSSPYAIAKYMEEKFKPVLPANFKKILSLQLKNQTRRGKLVKIKASYKLSDAEKPKKEKKNTPKAKKQQNQKRKRNGSLGGKKSNKKKEMVKKVVNEKKSKVSGSAKPKQPKSIKSTTNKIIMTETM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00973 189 PRINTS Histone H5 signature 162 179 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mepo5g00973 189 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mepo5g00973 189 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mepo5g00973 189 Pfam linker histone H1 and H5 family 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo5g00973 189 MobiDBLite consensus disorder prediction 1 47 - -
Mepo5g00973 189 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo5g00973 189 MobiDBLite consensus disorder prediction 122 143 - -
Mepo5g00973 189 MobiDBLite consensus disorder prediction 20 40 - -
Mepo5g00973 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo5g00973 189 SUPERFAMILY "Winged helix" DNA-binding domain 40 125 IPR036390 -
Mepo5g00973 189 CDD H15 41 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo5g00973 189 PANTHER HISTONE H1 24 168 - -
Mepo5g00973 189 MobiDBLite consensus disorder prediction 96 189 - -
Mepo5g00973 189 MobiDBLite consensus disorder prediction 168 189 - -
Mepo5g00973 189 Gene3D - 38 138 IPR036388 -
Mepo5g00973 189 MobiDBLite consensus disorder prediction 144 166 - -
Mepo5g00973 189 MobiDBLite consensus disorder prediction 106 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00973 Mepo-Chr5 9543963 9544749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00973 41 164 Single Myb Histone (SMH) Gene Family AT1G72740 29.839 3.56e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00973 K11275 - gmx:100500169 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00973 5 9543963 9544749 Mepo5g00973 5 9543963 9544749 ECH