Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00963 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAGGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGTTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCGAGTGACGTGCCGCGGTGCGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTCTTTAGGCAAAGAGTTGAGTTTCCAGGCGATAAACCTAGTAATGCAGACAACCCGGCTTCACAACCTCTAGATCCAGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAACAAAAAATGGGAGAGAAGCAACAAAATCATAGGATGCCTCCGGTTCCAACTTCAGAACCTAATGCTGATGGGAATTCTAAGATGGAAAATAAATTGATTGATTTGAACATGAAGCCTAACAACAGAATACATGAACATGCATCAAATAATCAGGTTAGAGTTCATGGGACGTAA 573 0.4241 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEPNADGNSKMENKLIDLNMKPNNRIHEHASNNQVRVHGT 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00963 190 SMART bboxneu5 51 96 IPR000315 GO:0008270
Mepo5g00963 190 SMART bboxneu5 1 47 IPR000315 GO:0008270
Mepo5g00963 190 MobiDBLite consensus disorder prediction 105 190 - -
Mepo5g00963 190 FunFam B-box zinc finger protein 19 2 92 - -
Mepo5g00963 190 Gene3D Classic Zinc Finger 2 91 - -
Mepo5g00963 190 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Mepo5g00963 190 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Mepo5g00963 190 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mepo5g00963 190 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Mepo5g00963 190 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Mepo5g00963 190 MobiDBLite consensus disorder prediction 175 190 - -
Mepo5g00963 190 MobiDBLite consensus disorder prediction 144 158 - -
Mepo5g00963 190 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Mepo5g00963 190 CDD Bbox1_BBX-like 56 96 - -
Mepo5g00963 190 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00963 Mepo-Chr5 9360167 9363046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00963 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.202 3.55e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mepo5g00963 zf-B_box 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00963 - - gmx:100780544 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00963 5 9360167 9363046 Mepo5g00963 5 9360167 9363046 ECH
Mepo3g08001 3 92863456 92865469 Mepo5g00963 5 9360167 9363046 ECH
Mepo2g02367 2 33441272 33442587 Mepo5g00963 5 9360167 9363046 ECH