Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00959 ATGGAACAATCGAAGCCGGAAACACCGGAGACAGTTCCGGCGACAGTTCCGGTGGCCGTTACGGAGACTGCGGCGGAGACGAAGCAAGTTGAAGTTCCGACGAAGGCTGTTTCCGATGTGAACATAACGGAGAGAGACGGCGGTTGTTGTACGGCGCCGAAAGTAGTTCTCGCTGTCATCGCCGAGAACAGTGAGTTTACGAAGAAGAAGCGAGGTCGTCCGGCGAAAGGAACTCCGAAAGTAGCTCCTCCGCCTAAGCAGATCAAGAAGGAAGATGAAGATGTTTGTTTCATTTGCTTCGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGTTGTCCTAAAGCGTATCATCCGGCGTGTGTCAAGCGAGATGAATCGTTCTTCCGTTCAAAAGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAGCATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGGGGTGTATAAAAAATGCGGATTTTGTTTCTGTTAGAGGAAATAAAGGTTTGTGTGGAATTTGCAAGAAAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGATGTATTGGATATTTTTGAAAGAGAATATATCTTTAACGTTTGATGAGCTCCTTCGAGCTAAAAACCCATTGAGCGCTGCTGCTCCTATGGTTCAAACTTCCCACAAACTATACCATCTTAAAGACGAAAAAGGTTCTGGTTTTGAGAACTCCTCTGTAGATATAGAATCAAATAATTTGAAAAATAAGAAGCCTAAGGGACCTTCAGGTGGTGACACGGGTGTGTCTTTGCCTGAGTGCAAGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTTACATATGAAAAATGGTGATACGTCTATACTTTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTAAAGAAAAACAATCTGCGTGACCCTCAACAGAAATCCCAAATTGTTTGCGATTCTAGACTAGTGAATTTGTTTGGAAAAGCTCGTCTTGGCTACATTGAAATGCTAATGCTCCTTGAACCCCACTTTCTTATAAAAGAAAATACACCTGCAGAAAATAATTTTGGAGCAGGAATTAGTGATGCTGTTGCGAATGGAAAGGAGGCCATTGACAGTAACAATAAACAGTCAGTGTTAGTCAATGATAAGAGATGCACAACAAGTAAAAAGGTTGACATGTCTGTGACACAAAATAATCAAGATGCATACGCGTCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACTGATGATAGTGAAAGGATTCACGAGAAGATTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGTAAGGTTGCTGAACCTTACAAAATTGGCACAAGAACGACTGACATTAAGCTTGAAATTTTAAATTTAAACCGGAAGGAGGTCATATCGATAGACGAGATTTCGAATCAGGAGTTCTCTGAGGATGAATGCAAGCGATTGCGTCAAAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATTCTGAACAAAGCGCTGACATTTCAAGAAATTAGAGTTGATGATTTATTGGAAGCTGAGAAATTGCGGCTTAATAATCTTCGTGATAGAGCAAGCGAGAAGGGACACAGAAAAGAGCTTAAAGAATGCGTAGAGAAGTTGCAGCTACTAAATTCCCCGGAGGAACGTCAGCGCAGACTGCATGAAGTTCCAGATGTACACTCTGACCCCAATTTGGATTCATTGTATGAGTCTGATGAAGATGCTGGAGAGTCAGATGGCAATAAACAAGATGGTAATATACCCATTTTCTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGAAGAACTCGGGACTTGACCACTGCCAGTGACCCAATTGAGAATACATGCTTACTAAAGAAGCATATCAACCCAAACGAAACTCCTATTAATGATAGTGCTGATGTTGTTACGAAGTCAGAAGTGTCTAGTGTTGCAGTGGACATTTCATCTCCACTTCTCTCTACAGGGATTGCGCAGCCATTTGATGATTTTATGAATGATAAGTCATGGCATTATCAGGATCCATCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAAAGTATGGAGGGTAGATGAGAAACAAGTAAACTCTATATTGTTAACTGATGCACTTAATGGGAAGTGCTCCAAAAATGTGCCATTACGGAACAACAGCCTATTGCTCTCTTTAGGAGCCAATGTTGCATTGGATGACAAAGAAAACAGTCAGGATGGTGGGAGGAATTCAACAACGAATGAAATTTCTGCAGATAGCCGAATCATCGAACAGATCAGAGAACAAAAAGTGGATGATACTTCGACCCAGTCTAATGGTAAAGATGAATCCGTGAGGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTCTACACAACCAACTGCTTTTTCTGAGAATTTGAATGAGAACCACACCAACAAATTAAGGGAGGATCATGGGATTGAGAAAAACTCTGAAGATAATGGAAATCATGACTTAAACAGGACTTCTGGTGGTCAGAGTAATAGTGGTCAGAATCATCAGAAGCAATCAGATAGTGAAGACAACTCAGGGCAATCTTCGGCACAAAGCTGGAGAAACCATAATGTAAATACTTCTTCCAATTGCTTGGATACCACATCGGCCCATGTTTCTGAAACAAGAACATCACCACTTAAGCTGGGATTTGATTTGCACCAACCCCCTTCCCCTCCAGCATGCAATGCAACTACATGGCAGGCTATTATAGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTGGAGGCAATGGAATCACTTGGTGGCTTGGAATCTCCTACTTCAATCATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGTCCAATGCTTGATGCAGGTAAAAGCGATGCATTGAGCTCCACGTGTGATTTACAGTTACTATCTCAATCTACAGCAGCAGAGGAACCGTTACAACAAGCAGATGTCAATCATCATCATCAAAGAATATCAGAGGAGCTTTCCTCGAGAAATTCTAAAGTTGACGTGGGTTCAAAGAACATATGTGTTTCAAGTAACCAGTGGGAGTCAGGCTCGGAAAATTCTTCTATTTTTCCAGCTACTGCAACATTGGGCATGACTGTAGACACCACTTGGAGACTTGGATTGGAAAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACACGAGTTGGGGAGTAGGACATACGGCAGTGAATGAGAACAGAAGCTCAAATTCATGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAGACAAGATACGGAAGTGATCGATTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGCAGAGCTGCGTGGAACAGGCAACCACTATTTGGTGCTGGTAATGGAGGCTCATATAGACCTCCGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAGGAAAGGGGCATCCTGTGAATACTTCCACCCATGA 3789 0.4257 MEQSKPETPETVPATVPVAVTETAAETKQVEVPTKAVSDVNITERDGGCCTAPKVVLAVIAENSEFTKKKRGRPAKGTPKVAPPPKQIKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDESFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIKNADFVSVRGNKGLCGICKKTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKMYWIFLKENISLTFDELLRAKNPLSAAAPMVQTSHKLYHLKDEKGSGFENSSVDIESNNLKNKKPKGPSGGDTGVSLPECKRWASKELLEFVLHMKNGDTSILSQFDVQNLLLEYVKKNNLRDPQQKSQIVCDSRLVNLFGKARLGYIEMLMLLEPHFLIKENTPAENNFGAGISDAVANGKEAIDSNNKQSVLVNDKRCTTSKKVDMSVTQNNQDAYASINAHNINLIYLRRSLMESLTDDSERIHEKIVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVDDLLEAEKLRLNNLRDRASEKGHRKELKECVEKLQLLNSPEERQRRLHEVPDVHSDPNLDSLYESDEDAGESDGNKQDGNIPIFSRIWDGVLNGVGGRTRDLTTASDPIENTCLLKKHINPNETPINDSADVVTKSEVSSVAVDISSPLLSTGIAQPFDDFMNDKSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLKVWRVDEKQVNSILLTDALNGKCSKNVPLRNNSLLLSLGANVALDDKENSQDGGRNSTTNEISADSRIIEQIREQKVDDTSTQSNGKDESVRSNGWHDQSHVHPSTQPTAFSENLNENHTNKLREDHGIEKNSEDNGNHDLNRTSGGQSNSGQNHQKQSDSEDNSGQSSAQSWRNHNVNTSSNCLDTTSAHVSETRTSPLKLGFDLHQPPSPPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPMLDAGKSDALSSTCDLQLLSQSTAAEEPLQQADVNHHHQRISEELSSRNSKVDVGSKNICVSSNQWESGSENSSIFPATATLGMTVDTTWRLGLESTHLEWGGMDQRNANTSWGVGHTAVNENRSSNSCTSVVTPSFGDSQTRYGSDRFSVPRDRGFPGHGREPGLVRGRAAWNRQPLFGAGNGGSYRPPPKGQRVCKFYESGYCRKGASCEYFHP 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00959 1262 Gene3D - 437 566 IPR036128 GO:0003677
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 834 863 - -
Mepo5g00959 1262 ProSiteProfiles GYF domain profile. 733 787 IPR003169 GO:0005515
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 906 959 - -
Mepo5g00959 1262 SMART rtf1 436 546 IPR004343 GO:0003677
Mepo5g00959 1262 Pfam GYF domain 736 779 IPR003169 GO:0005515
Mepo5g00959 1262 ProSiteProfiles SWIB/MDM2 domain profile. 293 376 IPR003121 -
Mepo5g00959 1262 ProSiteProfiles Plus3 domain profile. 436 569 IPR004343 GO:0003677
Mepo5g00959 1262 SMART gyf_5 734 789 IPR003169 GO:0005515
Mepo5g00959 1262 FunFam Zinc finger CCCH domain-containing protein 19 85 185 - -
Mepo5g00959 1262 SUPERFAMILY FYVE/PHD zinc finger 90 140 IPR011011 -
Mepo5g00959 1262 FunFam Zinc finger CCCH domain-containing protein 19 437 566 - -
Mepo5g00959 1262 Gene3D SWIB/MDM2 domain 292 383 IPR036885 -
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 895 959 - -
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 611 630 - -
Mepo5g00959 1262 ProSiteProfiles Zinc finger C3H1-type profile. 1237 1262 IPR000571 GO:0046872
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 611 650 - -
Mepo5g00959 1262 SUPERFAMILY SWIB/MDM2 domain 298 375 IPR036885 -
Mepo5g00959 1262 SUPERFAMILY GYF domain 732 786 IPR035445 -
Mepo5g00959 1262 Pfam SWIB/MDM2 domain 301 374 IPR003121 -
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 813 880 - -
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 864 880 - -
Mepo5g00959 1262 SMART swib_2 297 379 IPR019835 -
Mepo5g00959 1262 ProSitePatterns Zinc finger PHD-type signature. 96 156 IPR019786 -
Mepo5g00959 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 201 IPR013083 -
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 263 292 - -
Mepo5g00959 1262 SUPERFAMILY Plus3-like 438 566 IPR036128 GO:0003677
Mepo5g00959 1262 CDD PHD5_NSD 95 140 - -
Mepo5g00959 1262 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 981 1262 - -
Mepo5g00959 1262 MobiDBLite consensus disorder prediction 266 280 - -
Mepo5g00959 1262 Gene3D - 735 791 IPR035445 -
Mepo5g00959 1262 ProSiteProfiles Zinc finger PHD-type profile. 93 159 IPR019787 -
Mepo5g00959 1262 CDD SWIB-MDM2_like 298 374 - -
Mepo5g00959 1262 Pfam Plus-3 domain 441 544 IPR004343 GO:0003677
Mepo5g00959 1262 CDD GYF 733 788 IPR003169 GO:0005515
Mepo5g00959 1262 SUPERFAMILY CCCH zinc finger 1237 1261 IPR036855 GO:0046872
Mepo5g00959 1262 SMART PHD_3 95 141 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00959 Mepo-Chr5 9324382 9331061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00959 92 164 PHD Transcription Factor Family AT5G36670 36.000 6.96e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mepo5g00959 Plus-3 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00959 - - aprc:113869503 1907.88