Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00958 ATGGAACAAAATCACCACCAACCGATTCAGCAACCGGTAATTCCACTTCCAATTCCGGTCACCGGAGGAGAATTAACAGTTTCTGAACATACTCCGATGATCGGAGTCAACGCTACCGACGCTGACGTGGCGGTGAGTAAGAAACGCGGTCGTCCGCCGAAAGGTACTGTTCATGTTCATACTCCGGTTGTGAAGAAGCCGAAGGATGAAGAAGATGTATGCTTCATTTGCTTTGACGGTGGTTCACTTGTTCTTTGTGATCATCGGGGTTGTCCTAAGGCGTATCATCCGGCTTGTGTTAAACGAGATGAAGAGTTTTTCCGTTTAGCTGAGAAATGGAAATGTGGTTGGCATCTATGTAGTGATTGTGGCAAATCGTGCCACTACATGTGCTATACCTGTCCATATTCCTTGTGCAAGGGATGTACAAAACAAGAGTCTGATTTTGTTAGTGTCAGAGGAAACAAAGGTTTGTGCGGAGCATGCTTGAGGACTATAATGCTGATCGAGAATAGTGCCCAAGGAATTAAGTGCGAAGTGGATTTTGATGATAGAAGCAGCTGGGAGTATCTTTTCAAGGTGTACTGGTTGTACTTGAAAGGAAAACTATCTCTAAATTTTGATGAGATCCTTCGAGCTAAAAATCCTTGGAAAGGTGCTGTTCGTGCGAGTTGCAAGGTTCAAACTCCTCGGAAGCGTCATCATCTTAAAGTTGACACTGGTTGTGGTTCCGAGAATTCCTGTATAGTAGATTCAAATAGTCCAATAAACAAGAAGGCTAAGGGAAATGTTTGGGACAGTGTCTTGGACGGTGTTGGAGGCAATGCACAAGAACTTTCCACTACTTGTGAGCTAAATGTGAATACATGTACAATAAAGAACGAAATGAATACTAATGAATCAGCAATCAATGATGGCACTGATGCAGGGGTTTCAAGACTAGGAGATTCCGGTGTTGCAGAAGACATTTCATCGTTACTTCACTCTACAGGGATGGAACAGCCAGTCTGGCATTATCAGGATCCAACTGGGAAGGTTCATGGTCCTTTTAGTATGTCGTTGCTGTGCAAGTTGAAAGGAACTGAATATTTCTCTCCAGATCTCAGAGTATGGAGGGTAGATGAGAAACAAGAGAACTCTATATTGTTATCTGATGCACTGAGTCTGAAGTGTTCCCAAAATGTATCATTGCCACTCAACTGTGAACAACAGTCTTTGGGAGCCAGTGTTGCATTGGAAAATAAAGAAAATAGTCAGGATGGTCTTAGCAATGCAACAAGGAGTGAAATTTGTGCTAACAACCAAATTGTCAAGCAGAGCGAGGAAGAAAAGGTGGGTGATACTTCTACCCCACCTAATGGTACAGATGAATCTGTTAAGAGCAACGGAGGGTACACTCCGTCTCCTGGTGTGACCACACAAGCAGATGGGAATATCAGTGATGGGCAAAGTGGTTATTTTGAACGAAGGGAAGAGTCACCTAAATGTGAAATTTCTTGTCATGGTGGTCCCGACGTACACCTTGCACTACCTTCAACTGCCTTTGATGAGAATTTGAATGACAAACCTTCTGATGAAGTGGTGGAAGGTCATGGGAATGACAAAAAATTGGAAGTGAATGGAAATTTGGGTTCCAATGGGTCTTATGAGCGTCCGAGTAATAGTGGGCAAAGTGATCAGAAACAATCCGACATTGAAGAGAATCCGGGGCAATCTTCTGGTCAGAACTGGATGATGGCAGCACTCTTTGGCGATGATTTCCTAGTTGATGATTCAGTTTCAAATCTTTTGGACGCAGTAGCGGCGGAGGAGAAACACAGTGTCACGGAACCTTCTGCCGAAGAGTGGGATATTGATGTGTTCACTGATGGTGCTATAACTGATTGTTTACAAGGTATAATACTACCAGATTTTGATGCAGGTAAAGGTGATGCTCTGAGCTCCTCAGGTGATTTACATTTACCCTCTCAATCCACTGTAGCAAATGAGCAACCGTTTCAGCAAGCAGATGTGCATAATCAGCAAACTATATCGGGGGAACAATCTTCAAAAACTCCTGAAGTTGAGGCTTCTTTCCCAGGTATTTGCTGGAACCAAACTCATCAATTTCCATGGGGTCCACCTCGTAAGTTGTTTCTCTACCTTCTTCCCTAA 2154 0.4345 MEQNHHQPIQQPVIPLPIPVTGGELTVSEHTPMIGVNATDADVAVSKKRGRPPKGTVHVHTPVVKKPKDEEDVCFICFDGGSLVLCDHRGCPKAYHPACVKRDEEFFRLAEKWKCGWHLCSDCGKSCHYMCYTCPYSLCKGCTKQESDFVSVRGNKGLCGACLRTIMLIENSAQGIKCEVDFDDRSSWEYLFKVYWLYLKGKLSLNFDEILRAKNPWKGAVRASCKVQTPRKRHHLKVDTGCGSENSCIVDSNSPINKKAKGNVWDSVLDGVGGNAQELSTTCELNVNTCTIKNEMNTNESAINDGTDAGVSRLGDSGVAEDISSLLHSTGMEQPVWHYQDPTGKVHGPFSMSLLCKLKGTEYFSPDLRVWRVDEKQENSILLSDALSLKCSQNVSLPLNCEQQSLGASVALENKENSQDGLSNATRSEICANNQIVKQSEEEKVGDTSTPPNGTDESVKSNGGYTPSPGVTTQADGNISDGQSGYFERREESPKCEISCHGGPDVHLALPSTAFDENLNDKPSDEVVEGHGNDKKLEVNGNLGSNGSYERPSNSGQSDQKQSDIEENPGQSSGQNWMMAALFGDDFLVDDSVSNLLDAVAAEEKHSVTEPSAEEWDIDVFTDGAITDCLQGIILPDFDAGKGDALSSSGDLHLPSQSTVANEQPFQQADVHNQQTISGEQSSKTPEVEASFPGICWNQTHQFPWGPPRKLFLYLLP 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00958 717 SMART gyf_5 335 390 IPR003169 GO:0005515
Mepo5g00958 717 MobiDBLite consensus disorder prediction 515 575 - -
Mepo5g00958 717 MobiDBLite consensus disorder prediction 539 575 - -
Mepo5g00958 717 Gene3D - 336 393 IPR035445 -
Mepo5g00958 717 MobiDBLite consensus disorder prediction 446 481 - -
Mepo5g00958 717 CDD PHD5_NSD 73 118 - -
Mepo5g00958 717 MobiDBLite consensus disorder prediction 435 499 - -
Mepo5g00958 717 ProSiteProfiles GYF domain profile. 334 388 IPR003169 GO:0005515
Mepo5g00958 717 SMART PHD_3 73 119 IPR001965 -
Mepo5g00958 717 MobiDBLite consensus disorder prediction 519 536 - -
Mepo5g00958 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 162 IPR013083 -
Mepo5g00958 717 SUPERFAMILY GYF domain 324 388 IPR035445 -
Mepo5g00958 717 SUPERFAMILY FYVE/PHD zinc finger 68 118 IPR011011 -
Mepo5g00958 717 Pfam GYF domain 337 377 IPR003169 GO:0005515
Mepo5g00958 717 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 22 259 - -
Mepo5g00958 717 FunFam Zinc finger CCCH domain-containing protein 19 63 164 - -
Mepo5g00958 717 ProSitePatterns Zinc finger PHD-type signature. 74 134 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00958 Mepo-Chr5 9297248 9301634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00958 71 145 PHD Transcription Factor Family AT4G14920 37.333 7.79e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00958 - - tpra:123904147 999.193