Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00952 ATGGAGTGCGTTGAAACAGCGTTGAAAACCAGTTTAAGGAAAGACATAACTCCTCAAACATTTGTTGATGAAATTTCAGTACTCAATGCACAAAATGGAACAACTTCTGATGATTTTTTCGTTGACGACCTCCTTGACTTCTCTCACGTTGAAGAACAACAACAAGAACAAGATGAACAACAAGAACACTCTCCTTGTCTCTCCCTCAAACAAAACCATGAAACTTCAAACCCTAACACCACTTTCTCTCTCAAAGAAGATTATCCTTCTCTACCCACCAACGAACTCAATGTTCCGAGTGATGATGTAGCGGATTTGGAATGGCTTTCACATTTCGTTGAAGATTCTGATTCCTTCTCTGGAATGGCTTTAGCAACAACAACGGAGAAAAACCCTAAAAGCCTTGTTGCGTTTGAAGAACCCAAGCCGAAACAAGAAAACCCGGTTTTTACTACTTTCAAAACACCGGTTCAGACCAAAGCTAGAAGCAAAAGAGCCAGAACCGGTGTTAGGGTTTGGCCATTCGGGTCAACCGATTCTTCTTCAAGCTCAACCACCACCACAACTTCATCTTCAACCTCTTCATCTCCAACCAGTCCCTTGCTGATTTACACCAACATGCTTCAAAGTTTTGACTCGGTTAAGGTAAAGAAACCGAAGAAAATACCTTCTTCTAACGGGTCGGGTCAGGGTGGTGCGGTGGTTATGGCGGCGCCACCTCGACGGTGCAGTCATTGTGGTGTAACAAAGACTCCTCAGTGGAGAAGTGGACCCCTTGGAGCAAAAACACTTTGCAATGCATGTGGGGTCCGTTTCAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGCCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTTCTTGAAATGCGGCGGAAGAAAGAGGTTGTTGGTGGTGTTGAAATTGAAGTTGAAACCGGTTTGTCCCGTTCTCCGGTTGTTCCTAGTTTTTGA 996 0.4438 MECVETALKTSLRKDITPQTFVDEISVLNAQNGTTSDDFFVDDLLDFSHVEEQQQEQDEQQEHSPCLSLKQNHETSNPNTTFSLKEDYPSLPTNELNVPSDDVADLEWLSHFVEDSDSFSGMALATTTEKNPKSLVAFEEPKPKQENPVFTTFKTPVQTKARSKRARTGVRVWPFGSTDSSSSSTTTTTSSSTSSSPTSPLLIYTNMLQSFDSVKVKKPKKIPSSNGSGQGGAVVMAAPPRRCSHCGVTKTPQWRSGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIEVETGLSRSPVVPSF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00952 331 Gene3D - 236 310 IPR013088 GO:0006355|GO:0008270
Mepo5g00952 331 MobiDBLite consensus disorder prediction 60 93 - -
Mepo5g00952 331 SMART GATA_3 237 291 IPR000679 GO:0006355|GO:0043565
Mepo5g00952 331 Pfam GATA zinc finger 243 277 IPR000679 GO:0006355|GO:0043565
Mepo5g00952 331 CDD ZnF_GATA 242 290 IPR000679 GO:0006355|GO:0043565
Mepo5g00952 331 FunFam GATA transcription factor 234 318 - -
Mepo5g00952 331 MobiDBLite consensus disorder prediction 174 199 - -
Mepo5g00952 331 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Mepo5g00952 331 PANTHER GATA TRANSCRIPTION FACTOR 28 309 - -
Mepo5g00952 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 299 - -
Mepo5g00952 331 PIRSF Txn_fac_GATA_plant 1 326 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo5g00952 331 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Mepo5g00952 331 MobiDBLite consensus disorder prediction 215 234 - -
Mepo5g00952 331 MobiDBLite consensus disorder prediction 157 199 - -
Mepo5g00952 331 MobiDBLite consensus disorder prediction 52 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00952 Mepo-Chr5 9239589 9241166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00952 5 331 C2C2-Gata Transcription Factor Family AT5G66320 43.305 2.17e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo5g00952 GATA 2.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00952 - - psat:127120186 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00952 5 9239589 9241166 Mepo5g00952 5 9239589 9241166 ECH