Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00908 ATGAATGACTTGATGACAAAATCGTTCCTAAGTTATGTGGAATTGAAGAAACAGGCAACAAAAGATTTTGAAGATGTTGACCTTGAACTCGGGAACCTCAACCCAACACAAGACCCTAACCTCTCTCAATTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTAGATCTTCAGCAACTGAATGAAGAGACAAAATCCACTCACAGTGCGAAAGTTCTTCGCGGGTTAAGAGATCGAATGGATTCCAATATGGTTGCCGTGCTGCGCAAGGCAAATATAATCAAGGCAAGGTTAGAGGCTCTTCAGAAATCGAACATTGCGAATCGAAGCATATCAGAATGCTACAAAGAAGGAAGCCCTATTGATAGAACAAGAGTTTCTGTCACAAATGGTTTGAAGGTCAAGCTTAGGGACATGATGAATGATTTTCAGTCCTTGAGGGATAAAATTGTGTTGGATCATAAGGAGGATTTGAAGAGAAGGTACTATACTGTCACAGGCGAGGTACCTAGCGACGAGGTTATGGAGAAGATGATATCAGGAAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGATATGGGTACTCAGGTTAGGCATGAAGCTGTGATGGATATTCAGAGGAGTTTGAATAAGCTTCATCAGGTTTTTCTTGATATGGCTATTTTGGTCGAGACTCAAGGCGAAAAAGTGGATAACATTGAGGATAATGTGGTCAATGCTGCTCACTACATTCATGGTGGAACTAGTAATCTTTACTATGCCAGCCAGATCAAGAAGAGGAACAGGAAATGGGTCTATTGGATTATTGCTGTTTTGTTGATTGTGCTGCTGGTGTGTCTCATTGCAATGTTGGCTTCTTGA 894 0.4094 MNDLMTKSFLSYVELKKQATKDFEDVDLELGNLNPTQDPNLSQFFQEVEAIKVEMEEITNLLLDLQQLNEETKSTHSAKVLRGLRDRMDSNMVAVLRKANIIKARLEALQKSNIANRSISECYKEGSPIDRTRVSVTNGLKVKLRDMMNDFQSLRDKIVLDHKEDLKRRYYTVTGEVPSDEVMEKMISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKVDNIEDNVVNAAHYIHGGTSNLYYASQIKKRNRKWVYWIIAVLLIVLLVCLIAMLAS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00908 297 PANTHER SYNTAXIN 44 286 IPR045242 -
Mepo5g00908 297 Coils Coil 48 75 - -
Mepo5g00908 297 SUPERFAMILY t-snare proteins 38 258 IPR010989 GO:0016020|GO:0016192
Mepo5g00908 297 Pfam SNARE domain 239 289 IPR000727 -
Mepo5g00908 297 Pfam Syntaxin 43 238 IPR006011 GO:0016020
Mepo5g00908 297 FunFam Syntaxin 132 198 296 - -
Mepo5g00908 297 CDD SNARE_syntaxin1-like 207 262 - -
Mepo5g00908 297 CDD SynN 41 191 IPR006011 GO:0016020
Mepo5g00908 297 SMART tSNARE_6 198 265 IPR000727 -
Mepo5g00908 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 169 - -
Mepo5g00908 297 Gene3D - 199 296 - -
Mepo5g00908 297 Gene3D - 36 169 - -
Mepo5g00908 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Mepo5g00908 297 SMART SynN_4 36 163 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00908 Mepo-Chr5 8867635 8869164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00908 1 297 SNARE and Associated Proteins AT2G18260 59.283 1.76e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00908 K08486 - gmx:112997615 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00908 5 8867635 8869164 Mepo5g00908 5 8867635 8869164 ECH