Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00902 ATGTCGTTGAGAAGCATAGTACGGGAACTTAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACTGAGACCTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGGTTGACGTTTCCTATTTCGTTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCGTATCTATTGTACTATGGACTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTGGCTGCCAAGAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCTAACTTTTTGGGAACCAAATTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATTAAACAAAATAGTCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCCGGTAACTATATTGTTAGCACCGTTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAACATTTTTGTTCAGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGTCGGTACAGAGCCAAGGGCCATCTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGTCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTCGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA 1251 0.4508 MSLRSIVRELKEMRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIKQNSRSSRRFHSRQVSPRVPAGNYIVSTVAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELSVQSQGPSESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00902 416 MobiDBLite consensus disorder prediction 206 227 - -
Mepo5g00902 416 PANTHER TUBBY-RELATED 46 414 - -
Mepo5g00902 416 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Mepo5g00902 416 CDD F-box_AtTLP-like 55 99 - -
Mepo5g00902 416 SUPERFAMILY Tubby C-terminal domain-like 104 416 IPR025659 -
Mepo5g00902 416 Gene3D Tubby Protein; Chain A 114 416 IPR025659 -
Mepo5g00902 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Mepo5g00902 416 FunFam Tubby-like F-box protein 112 416 - -
Mepo5g00902 416 Pfam Tub family 116 411 IPR000007 -
Mepo5g00902 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Mepo5g00902 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Mepo5g00902 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Mepo5g00902 416 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Mepo5g00902 416 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mepo5g00902 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Mepo5g00902 416 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mepo5g00902 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Mepo5g00902 416 Gene3D - 48 103 - -
Mepo5g00902 416 Pfam F-box domain 55 101 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00902 Mepo-Chr5 8824726 8828643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00902 1 416 TUB Transcription Factor Family AT2G18280 62.291 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo5g00902 Tub 1.8e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00902 K19600 - gmx:100798958 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00902 5 8824726 8828643 Mepo5g00902 5 8824726 8828643 ECH
Mepo1g02059 1 21209371 21212306 Mepo5g00902 5 8824726 8828643 ECH
Mepo5g00902 5 8824726 8828643 Mepo1g02059 1 21209371 21212306 PCT