Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00897 ATGGAAACAAAGATGTCATCACAAACAACTTTAGGTTACAATAGAGATTCTTCTTCTTCTTCACCAACTCCACCACCTCAAGTAGTTCACACATTAGTCTTCAATAACCCACCTCAAAATTCACACCCTAACCATAATACTACTACTAATCTTTATCCACCACCACATCTTGCACCTTCTTCTCAAAGACCCATCATAGATCCAGATCTAACGGCTGCAACAACAACAACAAACACTTCTACAATAACAACACAACCTCAGGCACAACAAACAACAACAAAAATATGTTACCGAGAATGTCTGAGAAACCACGCGGCAAGCATGGGAAGCCACGTGGTAGATGGATGTGGTGAATTCATGCCAAGCGGTGAAGAAGGTACCCCACAATACTTCAAATGTGCTGCTTGTGATTGTCACCGTAATTTCCATAGAAAACATGTCCAACAACAACAACATAGTATTCCTCAACAACATGTTCCTAATTATCATCATAGCAACAACAACGGTCACCTTAATCTTCCAACACCATCTTCTTCATCTCAAAGAGTTTCACAACCTAGTTCTGGACAAGTTCCACCGTCCATGATGATGACTTTTGGATCAGTTCCAGCTGAATCATCAAGTGAAGATCTCAATATGTTTGGTGCACAATTTTCCATACAGACGCCGCAGCAACCGGTTTCGAAGAAGAGGGTAAGGACGAAATTCTCACAGCAACAAAAAGATAGGATGATGGAGTTTGCTGAAAAGATTGGGTGGAAGATTCAGAAACATGATGAACAAGAAGTGCAACAGTTTTGTTCTCAAGTTGGCATCAAGAGACAGGTTTTTAAAGTTTTTATGCATAATAACAAACAAGCTATGAAGAAACAGCAAATATGGTAA 885 0.3977 METKMSSQTTLGYNRDSSSSSPTPPPQVVHTLVFNNPPQNSHPNHNTTTNLYPPPHLAPSSQRPIIDPDLTAATTTTNTSTITTQPQAQQTTTKICYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPQYFKCAACDCHRNFHRKHVQQQQHSIPQQHVPNYHHSNNNGHLNLPTPSSSSQRVSQPSSGQVPPSMMMTFGSVPAESSSEDLNMFGAQFSIQTPQQPVSKKRVRTKFSQQQKDRMMEFAEKIGWKIQKHDEQEVQQFCSQVGIKRQVFKVFMHNNKQAMKKQQIW 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00897 294 Gene3D - 216 290 - -
Mepo5g00897 294 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 97 146 IPR006456 -
Mepo5g00897 294 FunFam Zinc-finger homeodomain protein 2 217 290 - -
Mepo5g00897 294 NCBIfam homeobox domain, ZF-HD class 229 286 IPR006455 -
Mepo5g00897 294 Pfam ZF-HD protein dimerisation region 95 147 IPR006456 -
Mepo5g00897 294 MobiDBLite consensus disorder prediction 147 198 - -
Mepo5g00897 294 MobiDBLite consensus disorder prediction 148 198 - -
Mepo5g00897 294 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 97 146 IPR006456 -
Mepo5g00897 294 MobiDBLite consensus disorder prediction 1 67 - -
Mepo5g00897 294 SUPERFAMILY Homeodomain-like 224 290 IPR009057 -
Mepo5g00897 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 74 286 - -
Mepo5g00897 294 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00897 Mepo-Chr5 8788192 8789980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00897 77 293 ZF-HD Transcription Factor Family AT2G18350 48.684 1.24e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo5g00897 ZF-HD_dimer 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00897 - - mtr:11413632 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00897 5 8788192 8789980 Mepo5g00897 5 8788192 8789980 ECH