Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00887 ATGATGCATCGTTCATCTCAAGGGCAACACGTGATGGGACACTGTTCATGTGGTATGTTTCATGGACAAAACAACTCATTCTCAATGTTATTCTCTACACCTTATGATGAACCTGAAACCTATTGCTTCACTCCTAATTCTTCATCTTCTTCTTCTGTTGATTGTACTCTTTCACTTGGAACACCATCCACTCGTTTCACTGAAGATGAAGAGAAAAGAAGCCGACATCATGAACGTCGTTCTGTCAAAAATTTCTGTTGGGATTTGTTAACACCTAAACAGTACAACAGTACTCAGTCTCAAACAAAGGCAACACGTGCAAGTACCAATAATAACAACAACTCCAACAATGATTCTCTTCTTGCTCGTAGATGTGCAAACTGTGACACCACCTCCACACCGCTCTGGAGGAACGGCCCACGAGGCCCAAAGTCACTATGCAATGCATGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCTGCCGGCACACCGACAGCGCCGTCTATCGGCGTAATGGAGTCAGCTTCGATGTATAACCACCACCATCACAACAACTCATGGTACGTGCAACCACAGAACCAGAAGATGCAGTGTTTCTCTCCAGCAATGACTAACGAGTTCCGTTTCATTGATGAAACCAATCATGATTCAGAAAATGGCATTCCATTTCTCTCTTGGAGACTCTAA 699 0.4392 MMHRSSQGQHVMGHCSCGMFHGQNNSFSMLFSTPYDEPETYCFTPNSSSSSSVDCTLSLGTPSTRFTEDEEKRSRHHERRSVKNFCWDLLTPKQYNSTQSQTKATRASTNNNNNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAGTPTAPSIGVMESASMYNHHHHNNSWYVQPQNQKMQCFSPAMTNEFRFIDETNHDSENGIPFLSWRL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00887 232 Gene3D - 121 201 IPR013088 GO:0006355|GO:0008270
Mepo5g00887 232 CDD ZnF_GATA 124 156 IPR000679 GO:0006355|GO:0043565
Mepo5g00887 232 ProSitePatterns GATA-type zinc finger domain. 125 150 IPR000679 GO:0006355|GO:0043565
Mepo5g00887 232 MobiDBLite consensus disorder prediction 97 116 - -
Mepo5g00887 232 PANTHER GATA TRANSCRIPTION FACTOR 18 2 232 IPR044272 GO:0003700|GO:0009908
Mepo5g00887 232 SMART GATA_3 119 172 IPR000679 GO:0006355|GO:0043565
Mepo5g00887 232 Pfam GATA zinc finger 125 159 IPR000679 GO:0006355|GO:0043565
Mepo5g00887 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 162 - -
Mepo5g00887 232 ProSiteProfiles GATA-type zinc finger domain profile. 119 155 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00887 Mepo-Chr5 8654922 8655710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00887 5 232 C2C2-Gata Transcription Factor Family AT3G50870 41.281 5.77e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo5g00887 GATA 5.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00887 - - mtr:11405635 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00887 5 8654922 8655710 Mepo5g00887 5 8654922 8655710 ECH
Mepo5g00887 5 8654922 8655710 Mepo1g02043 1 21075866 21077239 PCT