Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00872 ATGGATCCCAAGAACAATGTGAAAAACGACGATCCTCCAGCGGAATCACCAACTTCAGTTCTTGAAGAAGAGGAAGTGGAGGTGAAATCGGAGGAAGAGGTGATTGCGGATGATGGGTCATCGCTTGTACCTAAAACAATGGCGGTGGAAGAAGAGAAGTTGCTGGAAGCTCGTGTAAAGGAAGAAGAGGAAAAGATTGAAGTTGCGCCGAATCTGAATGATTCACAGTTTAATAAGTTGGATGAGCTTTTGACACAGACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGATGATATTACAATGGCTGCGGGTGAACAAGAGAAACCGGATGAAGAAGAGAGTAAACCGGTTGCAAAAAAGAAGGGCCGTGGATCAAAAAGAAAGGCAGCTTCACAATGCAACACTGGAAAAGCCAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATGTGAAGACTGAAGATGTGGATTTGACCGAGGAAGAAAGAACTGAGAAAGAGCAGAGGGAGCTGATGCCTTTACTAACTGGTGGAAAATTGAAATCTTATCAACTGAAGGGTGTTAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGGTTTCTTTCTCATCTAAAATCGAAAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGATGAATGAGATTAATAGGTTTACACCAACGCTCCCTGCTGTTATCTACCATGGTAACAAAGATCAGAGAGATGAAATCAGAAGGAAACATATGCCCAGAACAGTTGGCTCAAAATTCCCTTTAGTAATAACTTCTTATGAGATTGCTATGAATGATGCTAAGAAGTGTTTAAGGTCATACAGTTGGAAGTATCTTGTTGTTGATGAGGGACACAGGCTGAAAAACGCAAACTGCAAATTAGTGAGGATGTTGAAATACATCAGTGTTGAAAATAAGCTTCTTTTGACTGGTACACCACTCCAGAATAACTTGGCTGAGCTATGGTCACTGCTGCACTTCATCTTACCTGATATATTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAACCTGTCAGGAAAGTGCACTACTGGAGCAACAATGGAAGAGTTGGAAGAGAAAAGAAGAACCCAAGTTGTGGCCAAGCTTCATTCAATTCTCAGGCCATTTCTGTTGCGTAGGATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTATTTATGCGAACATGACTGAGCATCAGAAGAACTTGCAGGATCATTTAATTAACGAGACATTGGGGAAATATTTGGATAAGAAACGGTCAATTGGACGTGCTCCAACGAGTCTTAATAATTTGGTAATTCAGCTTAGGAAAGTCTGTAACCATCCTGATCTCTTAGAATCAGTCTTTGATGGTTCATATTTTTATCCTCCTGTGAATGAGATAATTGAAAAATGTGGAAAATTTCAATTGCTCGACCGATTGCTGGAGCGGCTATTTGCACGGAATCACAAGGTTCTGATCTTCAGTCAGTGGACCAAAGTGCTAGATATAATGGATTATTACTTTAGTGAAAAGGGTTTCGAAGTTTGCAGGATTGATGGTTCGGTGAAGCTGGATGATAGGAAACGGCAGATCCAGGACTTCAATGATACAACCAGCAACTGCAGAATCTTTCTTCTTTCCACCAGGGCTGGTGGGTTGGGAATAAACCTCACTGCAGCTGACACTTGTATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCACAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCTACTGCACAGTCAGTAGAGGGTCGGATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAGGAGCGCACAAAGCCTTCCATTATGGATGAAATGGAGGAAGAGGATGTTTTGGCATTGCTTCGAGATGAAGAAACCGCTGAGGACAAAATGATACAGAAAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGCGATCTTGTTATCAATAGCTCAACTGATGATAAAGCTGCAGTTAGTACCTTTTCTCTTAAAGGGCCTGGATGGGAGGTGGTGATGCCAACTGCGGCAGGGGGCATGCTTTCCACTCTTAACAGCTAA 2253 0.4163 MDPKNNVKNDDPPAESPTSVLEEEEVEVKSEEEVIADDGSSLVPKTMAVEEEKLLEARVKEEEEKIEVAPNLNDSQFNKLDELLTQTKLYSEFLLEKMDDITMAAGEQEKPDEEESKPVAKKKGRGSKRKAASQCNTGKAKKAVEAMITRSKENVKTEDVDLTEEERTEKEQRELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKSKGLDGPYMIIAPLSTLSNWMNEINRFTPTLPAVIYHGNKDQRDEIRRKHMPRTVGSKFPLVITSYEIAMNDAKKCLRSYSWKYLVVDEGHRLKNANCKLVRMLKYISVENKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFESWFNLSGKCTTGATMEELEEKRRTQVVAKLHSILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKNLQDHLINETLGKYLDKKRSIGRAPTSLNNLVIQLRKVCNHPDLLESVFDGSYFYPPVNEIIEKCGKFQLLDRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDTTSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPSIMDEMEEEDVLALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDDKAAVSTFSLKGPGWEVVMPTAAGGMLSTLNS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00872 750 Gene3D - 148 413 IPR038718 -
Mepo5g00872 750 FunFam ATP-dependent DNA helicase DDM1 178 423 - -
Mepo5g00872 750 PANTHER SNF2/RAD54 HELICASE FAMILY 53 703 - -
Mepo5g00872 750 Coils Coil 45 65 - -
Mepo5g00872 750 Pfam Helicase conserved C-terminal domain 509 620 IPR001650 -
Mepo5g00872 750 CDD SF2_C_SNF 496 630 - -
Mepo5g00872 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 673 IPR001650 -
Mepo5g00872 750 Pfam SNF2-related domain 187 484 IPR000330 GO:0005524|GO:0140658
Mepo5g00872 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 706 IPR027417 -
Mepo5g00872 750 SMART ultradead3 180 375 IPR014001 -
Mepo5g00872 750 FunFam Chromatin complex subunit A 106 424 651 - -
Mepo5g00872 750 Gene3D - 420 723 IPR027417 -
Mepo5g00872 750 MobiDBLite consensus disorder prediction 1 43 - -
Mepo5g00872 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 364 IPR014001 -
Mepo5g00872 750 MobiDBLite consensus disorder prediction 17 32 - -
Mepo5g00872 750 SMART helicmild6 536 620 IPR001650 -
Mepo5g00872 750 MobiDBLite consensus disorder prediction 106 121 - -
Mepo5g00872 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 414 IPR027417 -
Mepo5g00872 750 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00872 Mepo-Chr5 8483183 8489104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00872 236 682 RAD5 or RAD16-like Gene Family AT5G05130 25.182 3.22e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo5g00872 SNF2_N 5.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00872 K19001 - gmx:100777687 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00872 5 8483183 8489104 Mepo5g00872 5 8483183 8489104 ECH