Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00856 ATGAACCATCAAGACCAAATGATGCTCATGTCTCAGTTATTCCCCGCTTGTGAATACACCCAAATCATTTCTCAACAAGGGGATAAGAAGCCAAAGCCAAGACGTAAGCGTAGTAAGAAGAACAAAGGTGGAGAAAACAGTGCTAACCAAATATTGAACAAAAAGAGGAAATTGAGTGATGAACAGATGAAAATTTTGGAGGAAAATTTTGGAAATGAACATAAACTTGAGTCAGAGAAGAAGGATAGACTTGCAATGGAGCTTGGTTTAGATCCCAGACAAGTTGCAGTTTGGTTCCAGAATCGAAGAGCTAGGTGGAAGAACAAGAAACTTGAAGAAGAGTACTTAAGTCTTAAAAAAAATCATGAATCCACCATGCTTGAGAAGTGTCTCCTTGAAACCAAGATGTTGAAGCTAATAGAGCAGCTTTCTGAGGCAGAGAAGGAAATCCAACGCCTTCGAGAGCCAAATAGCAGCTCTAGTACTTCATCAATTTCACAATCCATGGAAGTGGTGGACCCACAATTACATGATGAATTTGAACTTAATCATATATATTATGATGATGTGTTTTTCATGTCGGATGCCACATATTACTTCAATGGCCAAGAATGGTATTAA 621 0.3833 MNHQDQMMLMSQLFPACEYTQIISQQGDKKPKPRRKRSKKNKGGENSANQILNKKRKLSDEQMKILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYLSLKKNHESTMLEKCLLETKMLKLIEQLSEAEKEIQRLREPNSSSSTSSISQSMEVVDPQLHDEFELNHIYYDDVFFMSDATYYFNGQEWY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00856 206 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 171 IPR045224 GO:0003700
Mepo5g00856 206 Coils Coil 49 69 - -
Mepo5g00856 206 Coils Coil 136 156 - -
Mepo5g00856 206 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Mepo5g00856 206 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Mepo5g00856 206 SUPERFAMILY Homeodomain-like 54 115 IPR009057 -
Mepo5g00856 206 SMART HOX_1 52 113 IPR001356 GO:0003677
Mepo5g00856 206 CDD homeodomain 54 110 IPR001356 GO:0003677
Mepo5g00856 206 Gene3D - 44 117 - -
Mepo5g00856 206 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Mepo5g00856 206 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Mepo5g00856 206 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Mepo5g00856 206 Coils Coil 101 128 - -
Mepo5g00856 206 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Mepo5g00856 206 MobiDBLite consensus disorder prediction 23 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00856 Mepo-Chr5 8340477 8342326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00856 7 155 Homeobox Transcription Factor Family AT4G36740 58.667 2.84e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mepo5g00856 Homeodomain 8.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00856 K09338 - gmx:100810736 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00856 5 8340477 8342326 Mepo5g00856 5 8340477 8342326 ECH