Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00855 ATGAACCATCAAGACCAAATGATGCTTATGTCTCAGTTATTCCCAGCTTGTGAATACACCCAAATCATTTCTCAACAAGGGGAGAAGAAGCCAAAGCCAAGACGCAAGCGTAGTAAGAAGAACAAAGGTGGAGAAAACAGTGCTGGTGAAATGAACAAAAAGAGGAAATTGAGTGATGAACAAGTGAATATTTTGGAGGAAAACTTTGGAAATGAACATAAACTTGAGTCAGAGAAGAAGGATAGACTTGCAATGGAGCTTGGCTTAGATCCTAGACAAGTTGCAGTTTGGTTCCAGAATCGAAGAGCTAGGTGGAAGAACAAGAAACTTGAAGAAGAGTACTTAAGTCTTAAAAAAAATCATGAATCCACCATGCTTGAGAAGTGTCTCCTTGAAACCAAGGTGTTGAAGCTAACGGAGCAACTCTCAAAAGCTGAGAAAGAAAATCAAAGGCTTCGAGAGCCAATTGAAAGGGTAACAAGCAGCAGTTCAAGTACTTCATCCATGTCTCAGTCAGTGGAAGTTGTGGACCCACCTTTTCTTGGTGAATTTGGTGTTGATAATGGATATGATGATGATGTGTTTTTCATGCCTAATGAAACATGTTACTACAATGGCATGGAATGGATAAGTTTGTACACGTAG 645 0.3969 MNHQDQMMLMSQLFPACEYTQIISQQGEKKPKPRRKRSKKNKGGENSAGEMNKKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYLSLKKNHESTMLEKCLLETKVLKLTEQLSKAEKENQRLREPIERVTSSSSSTSSMSQSVEVVDPPFLGEFGVDNGYDDDVFFMPNETCYYNGMEWISLYT 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00855 214 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Mepo5g00855 214 Coils Coil 100 127 - -
Mepo5g00855 214 SMART HOX_1 51 112 IPR001356 GO:0003677
Mepo5g00855 214 MobiDBLite consensus disorder prediction 156 171 - -
Mepo5g00855 214 MobiDBLite consensus disorder prediction 42 59 - -
Mepo5g00855 214 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
Mepo5g00855 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 167 IPR045224 GO:0003700
Mepo5g00855 214 MobiDBLite consensus disorder prediction 24 59 - -
Mepo5g00855 214 Gene3D - 44 116 - -
Mepo5g00855 214 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Mepo5g00855 214 SUPERFAMILY Homeodomain-like 52 114 IPR009057 -
Mepo5g00855 214 Coils Coil 135 155 - -
Mepo5g00855 214 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Mepo5g00855 214 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Mepo5g00855 214 MobiDBLite consensus disorder prediction 146 171 - -
Mepo5g00855 214 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Mepo5g00855 214 CDD homeodomain 53 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00855 Mepo-Chr5 8319020 8320706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00855 7 214 Homeobox Transcription Factor Family AT4G36740 54.976 1.01e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mepo5g00855 Homeodomain 7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00855 K09338 - gmx:100810736 296.589