Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00841 ATGTCTCGACGTTTTGGAGAATCAACGAAATCAGCATCTGCACCAAACCCGTCATGTTCATCAGGGAACAGTTCCAACAATGATCCTGGCGATGTTGGAGATTTCGAATGTAACATATGTTTTGATTTGGCACAGGATCCAGTGATCACACTTTGTGGTCATTTATTTTGTTGGCCATGTCTTTATAGGTGGTTACATCATCATTCCCATTCACAAGAATGTCCTGTTTGTAAAGCACTTGTTCAGGAAGAGAAATTGGTGCCTCTTTATGGTAGAGGTAAAACGCAGATGGATCCCAGAACTAAATCGTATCCGGGGATGGAGATTCCTCGTCGTCCTTCGGGACAGAGGCCGCAAACCGCGCAGAATCCACCACCTCATAACAATGGGAATTTTGCTGCTGGGATTGGATTGATGGGTGGATTTATTCCGACGGCTACTGCTAGATTTGGAAACTTTTCGTTTTCGACGGGTTTTGGTGGGTTTGGCGGGTTTATCCCCTCACTTATGAATATACACTTTCATGGTTTTCAGGATGCTACTGTTTATGGGACAACTTCTGGTAATCCATTTGGGTTTAACGGGTTTCAGGGTGGGAATGCGAGAGGTTTCAATTCACAAGCGACAGGACAAGTGCAACGGCAGGAGGATAATTGTTTGAAGAATTTGCTTTTGTTGATTGGATTTCTTGTCCTTCTTACGGTTATTTTTTTTATGTAA 720 0.4319 MSRRFGESTKSASAPNPSCSSGNSSNNDPGDVGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQMDPRTKSYPGMEIPRRPSGQRPQTAQNPPPHNNGNFAAGIGLMGGFIPTATARFGNFSFSTGFGGFGGFIPSLMNIHFHGFQDATVYGTTSGNPFGFNGFQGGNARGFNSQATGQVQRQEDNCLKNLLLLIGFLVLLTVIFFM 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00841 239 MobiDBLite consensus disorder prediction 93 130 - -
Mepo5g00841 239 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 20 91 - -
Mepo5g00841 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo5g00841 239 MobiDBLite consensus disorder prediction 1 27 - -
Mepo5g00841 239 SUPERFAMILY RING/U-box 33 90 - -
Mepo5g00841 239 SMART ring_2 37 77 IPR001841 -
Mepo5g00841 239 Pfam Zinc finger, C3HC4 type (RING finger) 36 77 - -
Mepo5g00841 239 MobiDBLite consensus disorder prediction 115 129 - -
Mepo5g00841 239 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
Mepo5g00841 239 CDD RING-HC_AtRMA-like 35 79 - -
Mepo5g00841 239 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Mepo5g00841 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 91 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00841 Mepo-Chr5 8172451 8173716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00841 23 237 C3H Transcription Factor Family AT2G23780 60.455 7.82e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00841 K10666 - gmx:100814783 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00841 5 8172451 8173716 Mepo5g00841 5 8172451 8173716 ECH