LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo5g00830	ATGGCGAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTTGACAAATTGGGTGGTGCTTTTGCTCCTAAACCCTCTTCAGGACCACACAAGTCCAGGGAATGTCTCCCACTCATTCTGATCTTACGAAACAGATTGAAGTATGCTTTGACATACCGTGAAGTCATTGCTATTCTGATGCAACGACATGTCCTTGTTGACGGCAAAGTCAGGACTGACAAGACTTATCCAGCTGGATTCATGGATGTTGTTTCAATCCCCAAGACAAATGAGAGCTTTCGTCTGCTGTATGACACCAAGGGCCGTTTCCGTCTTCATTCAGTCAGAGATGATGAGGCAAAGTTCAAGCTGTGCAAGGTGCGTTCAGTGCAATTTGGGCAGAAAGGTATCCCATACCTGAACACCTATGATGGTCGCACTATCCGCTACCCAGACCCCGTCATCAGGGCTAATGACACCATCAAGTTGGACCTGGAGGAAAACAAGATTGTTGATTTCATCAAGTTTGATGTTGGGAATGTAGTTATGGTTACTGGTGGTAAGAATAGGGGGCGTGTTGGAGTGATCAAGAACAGAGAAAAGCATAAGGGAACCTTTGAGACAATCCACGTTCAGGATGCCACAGGTCATGAGTTTGCAACTCGTCTGGTCAATGTGTTCACTATTGGCAAGGGGACAAAGCCATGGGTATCTCTTCCCAAGGGTAAGGGTATTAAATTAACCGTCATTGAGGAAGCTAGGAAGAGGGCTGCTGCAGCTCAGCAAGCAGTTGCTGCTTAA	798	0.4662	MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNESFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGKNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLVNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRAAAAQQAVAA	265

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo5g00830	265	FunFam	40S ribosomal protein S4	1	117	-	-
	Mepo5g00830	265	Pfam	Ribosomal family S4e	95	169	IPR013845	-
	Mepo5g00830	265	PIRSF	RPS4a_RPS4e	1	241	IPR000876	GO:0003735\|GO:0005840\|GO:0006412
	Mepo5g00830	265	Pfam	S4 domain	47	90	IPR002942	GO:0003723
	Mepo5g00830	265	CDD	S4	51	112	-	-
	Mepo5g00830	265	ProSitePatterns	Ribosomal protein S4e signature.	8	22	IPR018199	-
	Mepo5g00830	265	SMART	s4_6	42	106	IPR002942	GO:0003723
	Mepo5g00830	265	Pfam	40S ribosomal protein S4 C-terminus	212	258	IPR032277	-
	Mepo5g00830	265	Pfam	RS4NT (NUC023) domain	3	39	IPR013843	-
	Mepo5g00830	265	Hamap	30S ribosomal protein S4e [rps4e].	7	238	IPR000876	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo5g00830	Mepo-Chr5	7973309	7976173	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo5g00830	1	262	Cytoplasmic Ribosomal Protein Gene Family	AT5G58420	90.076	0.0	503

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo5g00830	K02987		-	gmx:100795220	499.59

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