Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00820 ATGTGTGTTGCAATTGCGGATGAGTACGATAAATATAGAGTTAATTTGCAGTCTATTAATCGAAATAACGATGCATTGTCTACGAGGGAAAATAGTGAAAGGGTACATTATACACCTGATTCACAAATCAATATGCCTTCTGGCACAATTGCAGAGATCGCCATGAGATCATTGCCTCCGGTTAAAAGTTTCGATGGTGACCAAAACAAGGATTGTCCTATTTGCATGGAAGAATTTGAGAAAGGAGAATTGATTCAATCTTTTGGAGTTTGTGCTCATGAATTTCATACCCCGTGTCTCAACTCTTGGTTACTCGGAGGAAAAACTACTTGTCCAGTTTGTCGCCATGATTTGCTTATCTAA 363 0.3857 MCVAIADEYDKYRVNLQSINRNNDALSTRENSERVHYTPDSQINMPSGTIAEIAMRSLPPVKSFDGDQNKDCPICMEEFEKGELIQSFGVCAHEFHTPCLNSWLLGGKTTCPVCRHDLLI 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00820 120 SUPERFAMILY RING/U-box 61 118 - -
Mepo5g00820 120 ProSiteProfiles Zinc finger RING-type profile. 72 115 IPR001841 -
Mepo5g00820 120 Coils Coil 9 29 - -
Mepo5g00820 120 SMART ring_2 72 114 IPR001841 -
Mepo5g00820 120 Pfam Ring finger domain 71 115 IPR001841 -
Mepo5g00820 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 118 IPR013083 -
Mepo5g00820 120 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 116 IPR044675 -
Mepo5g00820 120 CDD RING-H2 72 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00820 Mepo-Chr5 7835272 7835634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00820 54 120 C3H Transcription Factor Family AT2G27940 39.130 5.54e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00820 - - mtr:25492793 159.458