Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00792 ATGTCGTCATCATCAAATTCACCGTGTGCTGCGTGTAAGTTTCTCCGGCGAAAATGCACTCAAGAGTGTGTTTTTGCACCGTATTTTCCACCGGATAATCCTCAAAGATTTGCATATGTACACAAAGTTTTTGGAGCTAGTAACGTGGCAAAGCTGTTAAACGAGCTTAACGCGACGCAGCGTGATGACGCAGTTAAGTCGTTGGCTTATGAGGCCGAGGCGCGGCTGAGGGATCCGGTTTATGGTTGTGTTGGTCTTATTTCACTTCTTCAGCATAAGCTAAGAGCTATTCAAGGTGAACTTAATAATGCTAAGAAGGAACTTGCTACTTATATTGGTCCTCAAGCTCTTCAAGGTATTCCCACAACGATTCTTCAGCAACAGCAGCAGCATAATAACCCTTTTGGTAATTCTCTTTACCCTTATAATGGTGGTGTACCCGCGGTAACCGCGGGTGCACAGATGGTGATTCGTGACCCGCAGCAGACGCCTGCTGCGGCTCAGCATCAGATCTTGGAAGCTCAACAACTAGCTGCTGCTGTTGCTGCTAGAGAGCAACAAGAGATTTTTAGGACTTTTGAGAATCAACAACAGCAGCAACAGCAAGAGTTTTTGAGGTTTAGTGGTGGGTTTGATGTGGATTCAGTTTCTAATTCTTCTGCTGGTGGTGGGTTCAACCAAGTGTCCCCAGTTTCTGCTGTTGGTGTTGCTGCTGATCAATTGTCTCCTTCTTTGGCTTTGGGATCTTTTGATAACACTTATCATCACATGCAACAAGCACAACAAGGACAAGGAGGAGAATCTCATAACCTTCATCATCATCATCATCATCATCTTCCACTTCAGGCTCAGCTATTACTCCCACCACAACAGAAGCAAGCACAGCCACGCACTCATCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCTTCTTGTTGA 954 0.457 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGIPTTILQQQQQHNNPFGNSLYPYNGGVPAVTAGAQMVIRDPQQTPAAAQHQILEAQQLAAAVAAREQQEIFRTFENQQQQQQQEFLRFSGGFDVDSVSNSSAGGGFNQVSPVSAVGVAADQLSPSLALGSFDNTYHHMQQAQQGQGGESHNLHHHHHHHLPLQAQLLLPPQQKQAQPRTHQQQTESEECRSVGLGPSC 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00792 317 Coils Coil 87 107 - -
Mepo5g00792 317 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mepo5g00792 317 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 201 - -
Mepo5g00792 317 MobiDBLite consensus disorder prediction 286 309 - -
Mepo5g00792 317 MobiDBLite consensus disorder prediction 257 317 - -
Mepo5g00792 317 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00792 Mepo-Chr5 7552399 7554901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00792 3 229 AS2 family AT5G66870 53.689 4.96e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mepo5g00792 LOB 4.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00792 - - tpra:123910973 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00792 5 7552399 7554901 Mepo5g00792 5 7552399 7554901 ECH
Mepo1g01950 1 19738418 19745617 Mepo5g00792 5 7552399 7554901 PCT