Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00757 ATGGAGCAGAGAAAGCTTGTGGTTTTGGGGATTCCGTGGGACGTTGATACCGAGGGTTTGAAAGAATATATGAGCAAATATGGTGAATTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCCAAGGAAGTATTGTCAGGTGAACATGTTCTTGGTGATAGGATGCTGGAAGTCAAAGTGGCTACACCAAAGGAGGAGATGAGGGCACCAGCCAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCAGTAACAGAAGAAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGTATTGGTTTTATCACTTTCGCAAATGCAGAGTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTCGGAGGTTCTGCTGTAGTGGTTGATCGAGCTACACCTAAGGAAGATGACGTTAAGCCAACTGGCAGAATGTCACAGGGGGGAGGTTATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTCGGAGCTCCTACTTTGTATGACCATCCCGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGTAAAAAGATTTTTGTTGGTCGCCTCCCCCCAGAAGCAAATTCTGAGGATCTCCGTCAATATTTTGGAAGATTTGGCCGCATAGAAGATGTTTACATTCCCAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACTTTTGCTGATGAAGGCGTAGCAGATCGTGTCTCTCTAAGGCCTCATGAGATTTGTGGACACGAGGTGGCAATAGATTCAGCCACACCTGTTGACGATGCTAGGCCCAGTGGAAATTTTATGATGAACAATAGTATGGAATCTTTTGGGGGATATGGTGGTCCGGTGCGAAGTTATGGGAGGATGTACGGTGGTTTAGACTATGATGATTGGGGTTATGGAGTTCCCGGTGTGAGGCCATCCAGAGCAGATTATCAGGAGCAGATTGGGAGGCCATCGAGAGCAGATTATCAGGAGCAGATTGGGAGGCCATCAAGAGCAGATTATCAGGAGCATATTGGGAGGCCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG 1194 0.4523 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFANAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGHEVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPGVRPSRADYQEQIGRPSRADYQEQIGRPSRADYQEHIGRPSRADWRYRPY 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00757 397 Gene3D - 221 306 IPR012677 -
Mepo5g00757 397 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Mepo5g00757 397 Gene3D - 1 83 IPR012677 -
Mepo5g00757 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mepo5g00757 397 MobiDBLite consensus disorder prediction 357 384 - -
Mepo5g00757 397 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 223 380 - -
Mepo5g00757 397 SUPERFAMILY RNA-binding domain, RBD 224 325 IPR035979 GO:0003676
Mepo5g00757 397 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Mepo5g00757 397 SMART rrm1_1 226 297 IPR000504 GO:0003723
Mepo5g00757 397 SMART rrm1_1 93 164 IPR000504 GO:0003723
Mepo5g00757 397 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mepo5g00757 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
Mepo5g00757 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Mepo5g00757 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Mepo5g00757 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 301 IPR000504 GO:0003723
Mepo5g00757 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Mepo5g00757 397 Gene3D - 84 194 IPR012677 -
Mepo5g00757 397 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Mepo5g00757 397 SUPERFAMILY RNA-binding domain, RBD 89 191 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00757 Mepo-Chr5 7151577 7156767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00757 6 275 Eukaryotic Initiation Factors Gene Family AT3G16380 24.460 3.28e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00757 K14411 - gmx:100795240 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00757 5 7151577 7156767 Mepo5g00757 5 7151577 7156767 ECH