Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo5g00742 | ATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCAGAATATTTCCGAGATGTCAATGAACAGGACGTCCTTCTATTTATCGACAATATCTTCCGTTTTGTCCAAGCCGGATCCGAAGTATCTGCCCTATTGGGTCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTGGGTACTGAAATGGGTACTTTACAAGAACGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCACATTTGGATGCTACTACTGTACTATCGAGAGGGTTAGCTTCCAAAGGTATCTATCCAGCAGTCGATCCTTTAGATTCAACGTCAACCATGCTCCAACCTCGGATCGTTGGTGAAGAACATTATGAAACTGCGCAAAGGGTTAAACAAACGTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATTCTTGGGTTGGACGAATTATCCGAAGAGGATCGTTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCCCAACCTTTTTTCGTAGCAGAAGTATTTACAGAACGACAATTGCTTAAATACGTTCGTATCGCTGGAAAAGCGAAAGGTTCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGTCAATTAGTTAACCACGGACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGTTGTAAACCTCAAGATATTATTACAGCGAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTGAATCAGCCCCCCGCGAAGAATTGCCAACCCACTTGACTCTTCACCCATTCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTTGGTTTGAAAATTAATGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTTAA | 1035 | 0.4058 | MNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGTLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHGHVLVNGRIVDIPSYRCKPQDIITAKDEQKSRTLIQNSLESAPREELPTHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQT | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo5g00742 | 344 | SUPERFAMILY | Alpha-L RNA-binding motif | 195 | 342 | - | - | |
| Mepo5g00742 | 344 | Pfam | S4 domain | 232 | 279 | IPR002942 | GO:0003723 | |
| Mepo5g00742 | 344 | CDD | S4 | 232 | 291 | - | - | |
| Mepo5g00742 | 344 | FunFam | 30S ribosomal protein S4, chloroplastic | 231 | 327 | - | - | |
| Mepo5g00742 | 344 | SMART | s4_6 | 232 | 296 | IPR002942 | GO:0003723 | |
| Mepo5g00742 | 344 | PANTHER | ATP SYNTHASE | 1 | 237 | - | - | |
| Mepo5g00742 | 344 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 139 | IPR027417 | - | |
| Mepo5g00742 | 344 | Hamap | 30S ribosomal protein S4 [rpsD]. | 1 | 342 | IPR005709 | GO:0003735|GO:0006412|GO:0015935 | |
| Mepo5g00742 | 344 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 125 | 134 | IPR020003 | GO:0005524 | |
| Mepo5g00742 | 344 | Gene3D | - | 231 | 327 | IPR036986 | GO:0003723 | |
| Mepo5g00742 | 344 | ProSiteProfiles | S4 RNA-binding domain profile. | 232 | 295 | - | - | |
| Mepo5g00742 | 344 | Gene3D | - | 137 | 225 | IPR024034 | - | |
| Mepo5g00742 | 344 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 137 | 206 | - | - | |
| Mepo5g00742 | 344 | Gene3D | - | 1 | 134 | IPR027417 | - | |
| Mepo5g00742 | 344 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 1 | 134 | IPR000194 | GO:0005524 | |
| Mepo5g00742 | 344 | ProSitePatterns | Ribosomal protein S4 signature. | 230 | 254 | IPR018079 | GO:0019843 | |
| Mepo5g00742 | 344 | CDD | ATP-synt_F1_beta_C | 141 | 204 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo5g00742 | Mepo-Chr5 | 7060342 | 7068051 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo5g00742 | 2 | 241 | Primary Pumps ATPases(2) | AT1G78900 | 28.519 | 5.14e-23 | 98.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo5g00742 | K02112 | - | vvi:132254426 | 394.815 |