Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00727 ATGGCAGCAATTGAGATGAAACCGATGAAGTCACGGTGTGGAGACTTCGGCACTATGATCTCCTCTGAACCCAAACCTCCTGTCCGCGATCCCTCATGGTGGTTTGCACATGACAGTAAGGATTTCGCTTTTGTTTTTTCTATTATTTATCTCCCATATAAGTTTTCACTATTCTGCAATCACGATTTTCATGTCTATCAATCTAATGATATGTATCTATCTACAGGTTTCGGCAGTGAGGTTGAGTTTCCATTACCTTGTCCAAGAAGTTGTTGTCATAATACTGTTTATCATCCAGTTATTCGTGTTGATTATACACCTCCGATTGCGGGTATGTTTGTACCTCCATACCTGAGGGCTTTTGTGAAAGAGATGACTACGCAGTCATCCAATGACAAGAAAAAGAATTCTTTTCTGGTAGTCGTAGGCAGCCTCCCGCCCGAGACAAGGAACCATGATTTGCTTCAACTTTTCCAGCCTTTTGGTCATGTCATCAGTGCCGATGTTGCTATTGCTCAACACACTGGCCTTAGTGGCCGTTTTGCCTTTGTTAACTTTGCCACCAAGGAAGCTGCTCAAAGTGCTATTGAAAGACTCAATGGGATCGACTACCACAATTTCATCCTTAGAGTTGAATGGTTCACTCCAACAACAACCTAA 660 0.4258 MAAIEMKPMKSRCGDFGTMISSEPKPPVRDPSWWFAHDSKDFAFVFSIIYLPYKFSLFCNHDFHVYQSNDMYLSTGFGSEVEFPLPCPRSCCHNTVYHPVIRVDYTPPIAGMFVPPYLRAFVKEMTTQSSNDKKKNSFLVVVGSLPPETRNHDLLQLFQPFGHVISADVAIAQHTGLSGRFAFVNFATKEAAQSAIERLNGIDYHNFILRVEWFTPTTT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00727 219 SUPERFAMILY RNA-binding domain, RBD 128 216 IPR035979 GO:0003676
Mepo5g00727 219 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 130 215 - -
Mepo5g00727 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 207 IPR000504 GO:0003723
Mepo5g00727 219 Gene3D - 121 219 IPR012677 -
Mepo5g00727 219 SMART rrm1_1 139 212 IPR000504 GO:0003723
Mepo5g00727 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00727 Mepo-Chr5 6993247 6993906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00727 113 219 Eukaryotic Initiation Factors Gene Family AT3G11400 46.729 5.66e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00727 K03248 - cave:132164413 96.2857