Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00720 ATGGAACACAACACCAACAACAACAACATGGCTCAGTTTGACAAAAACATGTCTGCTTCACAAGACGAAATCTCTCTTTTTCTTCATCAAATTCTCCTCCGTTCATCTTCATCTTCTTCCATGCCAGGATCCATCAACCAGCTTCAAGATGGGAAGATCTCAGCCCTTGATTCAACTTCCAGACCAAACCATGCTTTAAATGTCACTTCCTCTTCTGTTGGAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGCGTTGATTGAAGAAGTTCCAACAAAGTCAGTTGGTGGTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAATTTGTCAGAAAAGAGAAGAAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAAAATCTAATTCCAAATTCTAACAAGACTGATAAAGCTTCAATGCTAGATGAAGCAATTGAATACCTTAAACAACTTCAGCTCCAAGTACAGATGTTGTCATTCAGAAATGGATTGAGTTTGCATCCTATGTACTTTCATGAAGGCCTGCATTCTCTGCCTTTGTCTCGGATGAGTACGGAGTTGAGTGAAGGAAACGGTTCTAACCCTTTAAATATGACATCTACTCTGCCTCATGCCCAAGACAACCCCTTACTCTATGCATCCAATCTACCTAACAAAAACACATTGCCGAGTCAGCCATCAATGTCTTCCTATCCTTCATATATTAACAACGCAGAAACTTCTTTCGGGTTGGAATCTGGAATCCCAGCACAGAAAAAACGTCTCCAACAATCTTCAGAGCCAATGCATGGCGAAGACCTGTTGCAGCACCAGCAATTGAATGCAATAAATTCTTTTACCAATCTATTAGGCGGTTCTCAAGTTGTCAAAGAATTTCGGTCGGGCGCAATGGCTACACCTACTACTAACAATACTTTGCAAACTTGTGTTGCCGGAAGAGATCAGTCAGGAGCGGTCATGAGAAATAGTGAGCCCAACATTATATTTACATCGCAGTTAAGTAGGTAA 1050 0.4105 MEHNTNNNNMAQFDKNMSASQDEISLFLHQILLRSSSSSSMPGSINQLQDGKISALDSTSRPNHALNVTSSSVGGGLSGNDTDEYDCESEEGVEALIEEVPTKSVGGSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSFRNGLSLHPMYFHEGLHSLPLSRMSTELSEGNGSNPLNMTSTLPHAQDNPLLYASNLPNKNTLPSQPSMSSYPSYINNAETSFGLESGIPAQKKRLQQSSEPMHGEDLLQHQQLNAINSFTNLLGGSQVVKEFRSGAMATPTTNNTLQTCVAGRDQSGAVMRNSEPNIIFTSQLSR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00720 349 MobiDBLite consensus disorder prediction 114 128 - -
Mepo5g00720 349 FunFam Basic helix-loop-helix transcription factor 111 174 - -
Mepo5g00720 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 176 IPR036638 GO:0046983
Mepo5g00720 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983
Mepo5g00720 349 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 15 289 IPR031066 -
Mepo5g00720 349 MobiDBLite consensus disorder prediction 55 85 - -
Mepo5g00720 349 SMART finulus 122 171 IPR011598 GO:0046983
Mepo5g00720 349 MobiDBLite consensus disorder prediction 55 78 - -
Mepo5g00720 349 MobiDBLite consensus disorder prediction 102 128 - -
Mepo5g00720 349 CDD bHLH_AtPIF_like 117 178 IPR047265 -
Mepo5g00720 349 Gene3D - 111 174 IPR036638 GO:0046983
Mepo5g00720 349 Pfam Helix-loop-helix DNA-binding domain 120 166 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00720 Mepo-Chr5 6929095 6932078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00720 80 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.224 1.60e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g00720 HLH 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00720 - - vum:124831111 368.237