Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00715 ATGGCTAACCAATATCGTTTAGGAAACCAGCATAATGAAGAAAGTAGCCCATATCGTAATGCAGTATATCTAAGACTATTTGGGTCAAATATTAGCATTATCAATGGAGGACCAAGAAGTGTGTCCTCCATTCCGGCTATTGGAGGACAAATTGGAGCTAGGCCTACTGAACCTGCTGCAAGATCTGATTATCAAAGAAGTGGAGTTGTTGCAGGAAATAGTAGTAATGTGAATTCCATTTCGTCATTCAATGATGGAATTAACACCACTACTACTGGTACTAGGAATGATGACTTGTTTCGTGCTAATTCACTGTTAAAGAGAAGTAGATCACCTGATCCATTCACTAGAGGTGAAACTTCTAATAAAGGTTTACAAGTTGACCCTTCGCCGAGTAGTTCTGTACCACCACGACAACCAATAACGACTTTAGACCCTACGCGGAGTAATAATTACCAGCTAAACCTTCCTCCATCTCCTCTTGGATCTGGATTTACTATTGCTGCACAAACTGATCAGTACATTCAGACTAGCTCAAGATCGCCAAGGTCAGATAATGCAGCTAGTCATGGTAGCATTTACCACAATTTCATTTCATCTTCTCATGAACTTAGGCCAGAGAGGAACACGCTGAGGATTGAGAACTTTTTAGTACTTGATTACTGGGCCACTCAAAATCGGCGGCTTCATTCTCAAGAGCGCATAGATCGGATGACTAATTTAGAGGACTGGCTTTCAGATGACTGGCTGGACAAGGTGATGAAGGCGGGGCTGAGAGAGGAGGAAATCTTCGAGTGCATCCAACATGAAACTTACCAGCCTAATATTGAGGAAACAAGCACAATGAATCAAACTTGCACCATATGTCAAGAAGATTATAGTGATGGGGAGCGTATTGGGAGACTTGATTGTATTCACGGTCACAGATATCATCTTGACTGCATCAGCCAATGGTTGGAGGTGAAGAATGTTTGTCCAGTCTGTAAGGAGATTGCTCTGAGGATTTATGATGAAGATGAATAA 1023 0.4174 MANQYRLGNQHNEESSPYRNAVYLRLFGSNISIINGGPRSVSSIPAIGGQIGARPTEPAARSDYQRSGVVAGNSSNVNSISSFNDGINTTTTGTRNDDLFRANSLLKRSRSPDPFTRGETSNKGLQVDPSPSSSVPPRQPITTLDPTRSNNYQLNLPPSPLGSGFTIAAQTDQYIQTSSRSPRSDNAASHGSIYHNFISSSHELRPERNTLRIENFLVLDYWATQNRRLHSQERIDRMTNLEDWLSDDWLDKVMKAGLREEEIFECIQHETYQPNIEETSTMNQTCTICQEDYSDGERIGRLDCIHGHRYHLDCISQWLEVKNVCPVCKEIALRIYDEDE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00715 340 SUPERFAMILY RING/U-box 285 332 - -
Mepo5g00715 340 CDD RING-H2_RNF24-like 284 329 - -
Mepo5g00715 340 MobiDBLite consensus disorder prediction 82 99 - -
Mepo5g00715 340 ProSiteProfiles Zinc finger RING-type profile. 286 329 IPR001841 -
Mepo5g00715 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 73 333 IPR045191 GO:0061630
Mepo5g00715 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 336 IPR013083 -
Mepo5g00715 340 MobiDBLite consensus disorder prediction 115 150 - -
Mepo5g00715 340 Pfam Ring finger domain 285 329 IPR001841 -
Mepo5g00715 340 SMART ring_2 286 328 IPR001841 -
Mepo5g00715 340 MobiDBLite consensus disorder prediction 82 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00715 Mepo-Chr5 6897735 6900202 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00715 202 334 C3H Transcription Factor Family AT2G15530 34.507 1.12e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00715 - - mtr:11411925 565.074