Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00687 ATGAACACAGTAATTAACAGAAAAGAAATGGATCGGATCAAAGGTCCATGGAGTCCAGAAGAAGATGAAGCACTTCAAAAACTCGTGGAGAAGCACGGGCCTAGAAACTGGTCGATTATAAGCAAATCGATACCAGGCAGGTCAGGGAAATCATGCAGGTTACGTTGGTGTAATCAGCTTTCACCACAAGTTGAGCATCGGGCTTTTACGCCTGAAGAGGATGATACTATAATCAGAGCCCATGCTCGATTTGGAAACAAATGGGCTACAATAGCCAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAGAATCATTGGAACTCTACTTTGAAACGTAAGTGTTCTTCTATTATGATTGATGATTCTGAATCTCCACCGTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATTCCTGTTTCTACTGGTCTTTATATTAACGCTAATTCTCCTGGTTCTCCTTCTGCATCCGATGTGAGCGAATCCAGCGTACCTATCGTGAACACTCATGTGAACTCTCATGTTTACCGACCTGTGCCAACGAGAACCGTCGCACCTCTACCACTCGTAGAAACGACGGCGTCTTCGAAATCGAACGATCCTCCAACTTCGTTATCACTTTCACTTCCCGGTGTTGGTGTTGGTGTTGATTCCTCTTCTGAAGATTCAAACCGTGTAACTGAGCCTGTCAACACTGTACCACCTCCTCCGCCAAGTGCGATCCCTTTGATTCCGGTAATGACTACGGCTGTACCTGTTCCGATGGCGGTTCCGATGCAACAATCGGGATCGGTGATGCCGTTTAGTTTTAATGCGGAGTTGTTGAGTGTGATGCAGGAGATGATTAGAACAGAGGTGAGGAGTTACATGGCGGGATTGGAGCAACAGAGTGGGATGTGTTTTCAAAAAGCTGAGGATGGAATTAGGAATGCTTTGGTGAAGCGAATTGGGATTAGCAGAATCGATTCGTAA 972 0.4547 MNTVINRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDDSESPPLKRSVSAGAAIPVSTGLYINANSPGSPSASDVSESSVPIVNTHVNSHVYRPVPTRTVAPLPLVETTASSKSNDPPTSLSLSLPGVGVGVDSSSEDSNRVTEPVNTVPPPPPSAIPLIPVMTTAVPVPMAVPMQQSGSVMPFSFNAELLSVMQEMIRTEVRSYMAGLEQQSGMCFQKAEDGIRNALVKRIGISRIDS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00687 323 MobiDBLite consensus disorder prediction 213 236 - -
Mepo5g00687 323 FunFam Transcription factor MYB44 68 114 - -
Mepo5g00687 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Mepo5g00687 323 PANTHER MYB PROTEIN-RELATED 14 191 - -
Mepo5g00687 323 SMART sant 13 62 IPR001005 -
Mepo5g00687 323 SMART sant 65 113 IPR001005 -
Mepo5g00687 323 CDD SANT 68 111 IPR001005 -
Mepo5g00687 323 FunFam MYB transcription factor 14 65 - -
Mepo5g00687 323 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Mepo5g00687 323 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Mepo5g00687 323 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Mepo5g00687 323 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Mepo5g00687 323 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Mepo5g00687 323 Gene3D - 67 131 - -
Mepo5g00687 323 Gene3D - 13 65 - -
Mepo5g00687 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Mepo5g00687 323 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00687 Mepo-Chr5 6629628 6631604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00687 7 322 MYB Transcription Factor Family AT4G37260 51.585 1.33e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo5g00687 Myb_DNA-binding 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00687 K09422 - gmx:780556 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00687 5 6629628 6631604 Mepo1g01849 1 18408961 18410308 ECH
Mepo5g00687 5 6629628 6631604 Mepo5g00687 5 6629628 6631604 ECH
Mepo1g01849 1 18408961 18410308 Mepo5g00687 5 6629628 6631604 PCT