Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00656 ATGAGTTGCAACGGTTGTCGTGTCCTTAGAAAGGGTTGTAGTGAGTCATGTATTTTACGCCCTTGTATTCAATGGATCGATACCCCTGAAGCTCAAGGTCATGCCACTGTCTTTGTAGCCAAGTTTTTCGGCCGTGCTGACCTTATGTCTTTCATTTCTAACGTCCCTCTACCACAGAGACCCGCTTTGTTTCAATCTTTGTTGTTTGAAGCGTGTGGAAGAACCGTGAACCCTGTTAACGGTGCTGTCGGACTTTTGTGGACAGGAAACTGGCACGTGTGTCAAGCGGCGGTTGAAACGGTGCTCCGCGGCGGAACCCTTAAACCCTTACCGGAGTTTCTCGGTTTAGACGCTCTTACTTCCACCGTTGATGACTCATCTGAAGGTGAAGTCACGTGCAACGACGCGCGGAAGATCCGAGATCCGAACCAGAAAGTCCGGTTCATGAGTTCCGGTGGTAAACGCAAGCGATCAGGTGGTGAAGTTTTGAAGCTTCCGGCGACGACTGATCTTAATCTCCGGTTGATGCCACAGAGCGCGTTGACCAACGGTTGCCGGAAGGAAATTCGTCGGCCGGGAACACCGTCGATGAATTCTGAGGAATCTGTAACGACGGTGACATGTTTGGAAAGTGGGATCGGAGGAGATAACTACGTTCACGACGGAGACCGCAAAGTTCTCAACCTTTTTGTTTGA 696 0.5029 MSCNGCRVLRKGCSESCILRPCIQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPLPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPLPEFLGLDALTSTVDDSSEGEVTCNDARKIRDPNQKVRFMSSGGKRKRSGGEVLKLPATTDLNLRLMPQSALTNGCRKEIRRPGTPSMNSEESVTTVTCLESGIGGDNYVHDGDRKVLNLFV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00656 231 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Mepo5g00656 231 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Mepo5g00656 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00656 Mepo-Chr5 6239797 6241127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00656 1 231 AS2 family AT4G37540 55.600 4.17e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mepo5g00656 LOB 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00656 - - gmx:100816189 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00656 5 6239797 6241127 Mepo1g01815 1 18012538 18013748 ECH
Mepo5g00656 5 6239797 6241127 Mepo5g00656 5 6239797 6241127 ECH
Mepo5g00656 5 6239797 6241127 Mepo4g04533 4 55063351 55064325 PCT
Mepo1g01815 1 18012538 18013748 Mepo5g00656 5 6239797 6241127 PCT