Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00653 ATGGCCATTAGGCCATTCCAATCAACTCTATCGCTCCAACGATTCTTCTCTCTTTTCCGAACTCCACATTCATTTTCCTCCTCTGCCACCACCACCACCACCAACTTTCCACCACCCTTTTCCGTTCTCAGTCGCTTCGCAACATCATTCTCACAACCTCGCCGCCCCCAATATCCTCCTCCGCCGCCGCGGCCCGACACTCTGGCTCAACGAATCGGCAAATCCATTCGCCGCCCCGGCGCTTCCTCTAAGGCCAGAATTTACGCTGATGTCAATGTTGTTCGACCTAAGGAATATTGGGATTATGAATCCCTAGCTGTTCAGTGGGGGGAACAAGATGATTACCAGGTTTTGAAGAAGGTTGGAAGAGGGAAATATAGTGAAGTATTTGAGGGTGTTCACTGTGGGAATGATGAAAAATGTATCATCAAGATACTCAAACCTGTCAGGAAGAAGAAGATAAAGAGGGAGATCAAGATATTGCAAAATCTCTGTGGAGGACCCAATATTGTAAAGTTGCTTGACATTGTTAGGGACCAGCAATCAAAGACCCCAAGCCTTGTATTTGAATGTGTTAATAACACCGATTTTAAAGTGCTCTATCCTACATTGTCTGACTATGATATACGCTATTATATCTATGAACTTTTAAAGGCATTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAACCACATAATGTTATGATCGATCATTCGCAACGTAAGCTTTGCCTGATAGACTGGGGACTTGCAGAGTTTTATCATCCCGGGCAAGAGTATAATGTCCGCGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTACTTATTGATCTTCAAGACTATGATTACTCGCTAGATTTATGGTCTCTCGGTTGTATGTTTGCTGGAATGATATTCCGGAAGGAGCCATTCTTTTATGGACAAGATAACTATGATCAACTAGCAAAAATAGCCAAGGTACTTGGAACAGATGAATTACGTGCGTATCAAGACAAGTATCACATAGAGTTGGACCCAAGTTATGCAGTGCTTATTGGGAGGCATGACCGGAAGCCATGGACAAAGTTCATTAATATGGATAACCGACACTTGGCTGTTCCCGAGGCTATTGACTTTCTGGACAAGTTACTACAATATGATCACCAAGAACGGCTCACTGCAAAAGAAGCTATGGCCCACCCCTACTTCAATCCAGTGAGAAATGCAGAAAGCAGTAAAACTCGCACACATTGA 1245 0.4369 MAIRPFQSTLSLQRFFSLFRTPHSFSSSATTTTTNFPPPFSVLSRFATSFSQPRRPQYPPPPPRPDTLAQRIGKSIRRPGASSKARIYADVNVVRPKEYWDYESLAVQWGEQDDYQVLKKVGRGKYSEVFEGVHCGNDEKCIIKILKPVRKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLVFECVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHSQRKLCLIDWGLAEFYHPGQEYNVRVASRYFKGPELLIDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGQDNYDQLAKIAKVLGTDELRAYQDKYHIELDPSYAVLIGRHDRKPWTKFINMDNRHLAVPEAIDFLDKLLQYDHQERLTAKEAMAHPYFNPVRNAESSKTRTH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00653 414 CDD STKc_CK2_alpha 96 400 IPR045216 GO:0004674|GO:0006468
Mepo5g00653 414 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Mepo5g00653 414 Pfam Protein kinase domain 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo5g00653 414 ProSiteProfiles Protein kinase domain profile. 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo5g00653 414 SUPERFAMILY Protein kinase-like (PK-like) 87 404 IPR011009 -
Mepo5g00653 414 Gene3D Phosphorylase Kinase; domain 1 115 191 - -
Mepo5g00653 414 SMART serkin_6 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo5g00653 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Mepo5g00653 414 FunFam Casein kinase II subunit alpha 101 191 - -
Mepo5g00653 414 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Mepo5g00653 414 FunFam Casein kinase II subunit alpha 192 403 - -
Mepo5g00653 414 PANTHER CASEIN KINASE II SUBUNIT ALPHA 80 410 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00653 Mepo-Chr5 6210670 6217955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00653 113 401 Core Cell Cycle Gene Families AT1G76540 30.573 1.98e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Mepo5g00653 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00653 K03097 - vvi:100262741 642.114