Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00616 ATGAAGTTCATGGAAAATATTGAGGATACCTTTAGCTTAAACAATCAAAATAGTAACATTTTTGGTTTATCTTTCTCTCCACAAATGAATATAGGTGCTCCTTCCACTGCTGAAGCTGTTCCAACAGGCTTTTATTATCAACCTACACCTCTTCATAACTATGGCTATTACTATGGACATGAAAGTGAACATGTTGGATTGTATTCAGCCTTGCCCATCATGCATGATGGATCACAAGCACAAGCAATGGGAATCTCTCATTATGGATGCAGTACCAAAGAAGAAATGCAACTAAGCATTGATAGTATTTTTAACAACCAAATTTCATACCATAAGCCAAACAATTTAGATAACCTAAATTTTACACAAGAGAATATGAGCCTGTTGGGCAGTTTGGCGGAGCACCAGAAGCAACAACTCTCATGTTACACCGTCTTAAGAAACGATAATGTGATCTTAGACGGGCCGACAAAATATCAGCTAGAAGATAGTGTCCAGTTACCAAATATATTAGTTGAGGATGAAATTTCTGATCTAAGGAGATGGGTATCAAGGGACTTTCATGCTGCTACTAACCATGCACAAGAGTCAAAGACATGTGTGCTGTCTGCAAGTTCTAGCTCACAATCAAGCTGTGTTACAAGTTCACGACAAACATCACCTATTGATTCTGCTTCCGTTGATACGATGAAAAGGAAGCATCAAATGGTGAACTTGAAAAAGAATCAGAACCAAACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGATGGACAGGTAGATATGAAGCTCATCTATGGGATAACAGCTGTAAAAAAGAGGGCCAAGCTAGGAAAGGAAAGCAAGTTTATCTAGGAGGTTATGATATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACTCGTATAAATTTTCCATTGGAAAATTATCAAAAGGAACTTGAGGAAATGAAGAAAATGACTAGACTAGAATACGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTATAGAGGAGTAACAAGCAGACACCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACTTTCACTACACAAGAGGAAGCAGGTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGCAAATGCTGTTACTAATTTTGATATAACAAAATATGATGTGGAGAAAATTATTGCAAGCAGTAACCTTCTTAGCAGTGAAGAAGCTAGGAGAAATAAAAAGATGGATGTAATTAACAATAATAAACCATGTACGTTTGAAGACATGGAAGAAGCAATTCCAGTGCAGAAAAGATGCAAATTAATTCAACCATTCTCAATAAATAACATATATGATGAAGAAATAGAGGAATCAAATAGAGTGCATATGTCAAATCCTTCTTCAATTGTGACAAGTTTGAGCAGTTCAAGAGAAGAAAGCCCTGAAAACATGACAAGTTTACCAATGCTCTTTGGAATGACTTCAACAGCATCAATAATGTCTTCATTTTCTTTGCCTCAGATGCCGCTGTCTGTTTTTGCTGCGTGGACTGATGCATAA 1638 0.3767 MKFMENIEDTFSLNNQNSNIFGLSFSPQMNIGAPSTAEAVPTGFYYQPTPLHNYGYYYGHESEHVGLYSALPIMHDGSQAQAMGISHYGCSTKEEMQLSIDSIFNNQISYHKPNNLDNLNFTQENMSLLGSLAEHQKQQLSCYTVLRNDNVILDGPTKYQLEDSVQLPNILVEDEISDLRRWVSRDFHAATNHAQESKTCVLSASSSSQSSCVTSSRQTSPIDSASVDTMKRKHQMVNLKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRLEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIIASSNLLSSEEARRNKKMDVINNNKPCTFEDMEEAIPVQKRCKLIQPFSINNIYDEEIEESNRVHMSNPSSIVTSLSSSREESPENMTSLPMLFGMTSTASIMSSFSLPQMPLSVFAAWTDA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00616 545 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 PRINTS Ethylene responsive element binding protein signature 396 416 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 MobiDBLite consensus disorder prediction 488 509 - -
Mepo5g00616 545 MobiDBLite consensus disorder prediction 211 226 - -
Mepo5g00616 545 ProSiteProfiles AP2/ERF domain profile. 253 319 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 187 441 - -
Mepo5g00616 545 Pfam AP2 domain 253 311 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 SUPERFAMILY DNA-binding domain 252 321 IPR016177 GO:0003677
Mepo5g00616 545 CDD AP2 354 416 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 MobiDBLite consensus disorder prediction 211 231 - -
Mepo5g00616 545 CDD AP2 252 319 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 SUPERFAMILY DNA-binding domain 354 415 IPR016177 GO:0003677
Mepo5g00616 545 SMART rav1_2 253 325 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 SMART rav1_2 355 420 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 ProSiteProfiles AP2/ERF domain profile. 355 414 IPR001471 GO:0003700|GO:0006355
Mepo5g00616 545 Gene3D AP2/ERF domain 252 321 IPR036955 GO:0003700|GO:0006355
Mepo5g00616 545 Gene3D AP2/ERF domain 355 416 IPR036955 GO:0003700|GO:0006355
Mepo5g00616 545 FunFam AP2-like ethylene-responsive transcription factor 354 416 - -
Mepo5g00616 545 FunFam AP2-like ethylene-responsive transcription factor ANT 252 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00616 Mepo-Chr5 5788113 5792590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00616 53 545 AP2-EREBP Transcription Factor Family AT4G37750 42.234 8.11e-122 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mepo5g00616 AP2 2.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00616 5 5788113 5792590 Mepo1g01767 1 17586542 17591828 PCT