Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00596 ATGTCAGTCTGTTTTGGACACTGTCCCTTGGATTCTAAGATTTCAATTTGCATGTCCCATACCACATCAAATCAAATCGAATTTCTAGGAAGGAAACTGAAGATGATGCAAATTATGTCCCCCATCTATGTGCCTGAACTTGGAATGGAGGATCTCAACTTCTTTAACCAATACCCGATGGATTCTCTTGCATCTCCAATATTATTCGACAACTTTGGCTTTCACTTTGATGACAACGAAACCACACCAAATTGTTTCCCGGTTGAAACTCGTCTTGATGATCAAACAAGGCCAACCAAGAAGATCAAGACATCGATAAACCATTCTTCCTATTCATCACCTCAACTCATTTCTTTTGAGCACTCGAGCTCAACACCAATTGCTTCAAAGCAATTTTATAACCTTGATTATTCCGATGTAAAACCTAAAGTCGAGAAAAGGTGTAATGAAAACAAAGATTTTCTTCCAGCTTTGGTTTCTCAAGGTTCTTATGCTGATCAAAAAATATTTTCAAATTATGGTAACCAAGCGAATCAGACCAGGAACACTACTCAAGCTCGAGAACATGTAATGGCTGAAAGAAAACGAAGGGAAAAGCTCACCCGAAGTTTCATCGCTCTTTCAGCAATTGTTCCTGGCCTCAAGAAGATGGACAAAGCTTCTGTGTTGGGAGATGCTATCAAGTACATGAAACAACTACAAGCACGTTTGGAGACACTTGAGGAACAAGCTGAAGACAACAAAAAAGCTGGATCCACAGTCCAAGTGAAGAGATCTATTATCTTCACTAATAATGATGATGATAGCAACTCCAATAACCAGCCACTTCCTGAAATTGAAGTAAGAGTTTCAAGCAAAGATGTACTCATCAAGATTCAATGTGACAAACATAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCACTGTCCAAAGTAGTACCTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACCATTGTTGCTCAGATGAACAAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATACGACAGGCTTTAATCGTCCATAATTAA 1080 0.3954 MSVCFGHCPLDSKISICMSHTTSNQIEFLGRKLKMMQIMSPIYVPELGMEDLNFFNQYPMDSLASPILFDNFGFHFDDNETTPNCFPVETRLDDQTRPTKKIKTSINHSSYSSPQLISFEHSSSTPIASKQFYNLDYSDVKPKVEKRCNENKDFLPALVSQGSYADQKIFSNYGNQANQTRNTTQAREHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLQARLETLEEQAEDNKKAGSTVQVKRSIIFTNNDDDSNSNNQPLPEIEVRVSSKDVLIKIQCDKHSGRAATVLGQLENLNLTVQSSTFLPFGNNIVDVTIVAQMNKENCVTAKDLLGSIRQALIVHN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00596 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Mepo5g00596 359 Coils Coil 223 250 - -
Mepo5g00596 359 Gene3D - 175 250 IPR036638 GO:0046983
Mepo5g00596 359 SMART finulus 190 239 IPR011598 GO:0046983
Mepo5g00596 359 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Mepo5g00596 359 PANTHER BHLH TRANSCRIPTION FACTOR 81 356 - -
Mepo5g00596 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 246 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00596 Mepo-Chr5 5526180 5528741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00596 36 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.957 7.15e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g00596 HLH 8.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00596 - - cam:101507557 371.318