Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00595 ATGACATCAAATGATGAGTCATGGACAAGTTGGTTGTGTGATTTGGCACCAGAAGATTACAATATCATCAATGAGATTAACATAGCCACTTTGCCACAAGAGAATAACAACTTGCAACAATCTTTCTCTGGTGGTAGCTATTGCTCTCACACAACCACCTCAAACACTATGAGCAATTCCTCAGGAGATGTTAACAGCTTTGAGAGGCCTACAAAGACACTCAAGACTAACCCTTCAAACATAGGGTACCCTTCCTTACCAAAAAAGGATTCTTCCCATTCTTACATTCTTTGCTTTGACAATGAGAATCAAGAACCAAAACTAGAACCAATGTTGAACATTGATTCAACTTTGAAACCAAAAGGCAAGGTTTTTAATCAAGGGAAATCTTTAACCTCAAAAGGGTTCTTAGAAAACCAAAAAAAGGGACCAAAACGCAATATTCAAGAGAGCAAGAAGACTGATTCCGCTGCCAGAAATGCTCAAGATCACATAATTGCTGAGAGAAAAAGAAGAGAAAAAATTAGTCAAAAGTTCATAGCTCTTTCAGCACTCCTACCAGACTTGAAAAAGATGGATAAGGCTTCTGTATTAGGGGATGCTATAAACCATGTGAAACAGCTTCAAGAAAAAGTGAAGCTATTGGAAGAAAAGAACCAAAAGAATAACCTAGAATCTGTGGTATATGTTGAGAAGACAAAGTCATGTTCTTCAGATGAAGATGTTTCAGACACCTCATCAAATTCTGGCTATGGTAATTGTTGTCACACTCACACCTCAAAACCAAGTAGGCCACTGCCTGAAGTTGAGGCAAGAGTGTCAGAGAAAAACGTGCTGATTCGTGTCCATTGTGAGAAACATAAGGGTGTATTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATCAGTTACTAGTAGTAGTGCATTGCCATTTGGAACCACAAAACTTGACATAACCATCATAGCTGAGATGGATGAGAAATTCAGCCTAAGCGTGCAGGAGCTAGCTAGAAAACTCCGAGTTGTACTTTTGTAA 1041 0.3852 MTSNDESWTSWLCDLAPEDYNIINEINIATLPQENNNLQQSFSGGSYCSHTTTSNTMSNSSGDVNSFERPTKTLKTNPSNIGYPSLPKKDSSHSYILCFDNENQEPKLEPMLNIDSTLKPKGKVFNQGKSLTSKGFLENQKKGPKRNIQESKKTDSAARNAQDHIIAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVKQLQEKVKLLEEKNQKNNLESVVYVEKTKSCSSDEDVSDTSSNSGYGNCCHTHTSKPSRPLPEVEARVSEKNVLIRVHCEKHKGVLMNIIQEIENLHLSVTSSSALPFGTTKLDITIIAEMDEKFSLSVQELARKLRVVLL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00595 346 MobiDBLite consensus disorder prediction 139 161 - -
Mepo5g00595 346 MobiDBLite consensus disorder prediction 133 161 - -
Mepo5g00595 346 Coils Coil 198 225 - -
Mepo5g00595 346 CDD bHLH_AtNAI1_like 160 232 - -
Mepo5g00595 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 225 IPR036638 GO:0046983
Mepo5g00595 346 Gene3D - 157 230 IPR036638 GO:0046983
Mepo5g00595 346 PANTHER BHLH TRANSCRIPTION FACTOR 36 345 - -
Mepo5g00595 346 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Mepo5g00595 346 SMART finulus 165 214 IPR011598 GO:0046983
Mepo5g00595 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Mepo5g00595 346 MobiDBLite consensus disorder prediction 53 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00595 Mepo-Chr5 5496412 5498503 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00595 9 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.617 3.78e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo5g00595 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00595 - - tpra:123911002 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00595 5 5496412 5498503 Mepo5g00595 5 5496412 5498503 ECH
Mepo5g00595 5 5496412 5498503 Mepo1g01747 1 17327854 17329467 PCT