Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00590 ATGAAAGGAAAAGCCTATCGAGGTAATAAAATTTCCTTCGGAAAATATGCTCTTCAGGCACTTGAGCCCGCTTGGATCACATCTAGACAAATAGAAGCAGGGCGACGGGCAATGTCACGAAATGTTCGCCGAGGTGGGCAAATATGGGTACGCATATTTCCAGACAAACCTGTTACAGTAAGACCTACCGAAACGCGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGATAGAAAAAAATGATATGATTCAACCTCAAACCTATTTAAATGTAGCCGATAATAGCGGAGCCCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGACGGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTACCAAATTCATCTTTAGAAAGATCTGAAGTGATCAGGGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTAGTAATGGTATAATAATAAAGTATGATGATAATGCGGCGGTTCTCATTGATAAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCTCGAGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGTATTATAA 615 0.3886 MKGKAYRGNKISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWIEKNDMIQPQTYLNVADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFTKIVSLAPEVL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00590 204 CDD Ribosomal_L16_L10e 7 78 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 NCBIfam 50S ribosomal protein L16 1 79 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo5g00590 204 FunFam 50S ribosomal protein L14, chloroplastic 83 204 - -
Mepo5g00590 204 Pfam Ribosomal protein L16p/L10e 1 79 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 83 203 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 SMART Ribosomal_L14_2 83 204 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 SUPERFAMILY Ribosomal protein L16p/L10e 1 78 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 ProSitePatterns Ribosomal protein L14 signature. 142 168 IPR019972 -
Mepo5g00590 204 Pfam Ribosomal protein L14p/L23e 83 204 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 Hamap 50S ribosomal protein L14 [rplN]. 83 204 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 Gene3D Ribosomal protein L14 83 204 IPR036853 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 Gene3D Ribosomal protein L10e/L16 1 81 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo5g00590 204 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo5g00590 204 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo5g00590 204 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo5g00590 204 SUPERFAMILY Ribosomal protein L14 83 204 IPR036853 GO:0003735|GO:0005840|GO:0006412
Mepo5g00590 204 NCBIfam 50S ribosomal protein L14 83 204 IPR005745 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00590 Mepo-Chr5 5360302 5361152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00590 90 204 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.294 4.33e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00590 K02874 - mtr:120580175 328.176