Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00584 ATGGCTACAGATATTGGCCTTCTTTCCAATATGACTCAGATCCAAAAATCATCACAATCACAATCTCAACAACACCAACCAAACCCTAATTCCAACACCACTACAACCCCTTCACCATCATCATCAACTTGGATGTGGAACCCTAAACAACACCACCAACAACAACAAGAACAAGAAGATGAAGATTCATGGGAGGTAAGGGCTTTTGCTGAAGACACAAGGAATATTATGAACACAACATGGCCACCAAGGTCCTACACCTGCACTTTTTGCAGAAGAGAGTTCCGGTCAGCTCAAGCTCTCGGTGGTCACATGAATGTTCACCGCCGCGACCGTGCTCGTCTCCATCAAAACCAACCACCATTAAATTCATCTCATCCTTCATCACCATTCATAAATATTCCTCCACAAGACCTTGTTGCTAATGCTGGATTGTGCCTTCTTTACCATTTACCAAACCCTAATAATAATGCTTTTCCTTCCTACAATAGTTCTAGTCCTAATGGAGAATCTCCTTCTACTTTTCTCTCAATCTCATCATCAACGTCTTATCCACCAAATAATTTGATGATGCAAATGCAAACTTGTTCTCCATCTTTTAATTTTCAAGTGGATAATTCAGCTAGGTTGATCAACAATAGCATTTCTTCTTTTTCTAGCAAAGTGGACCAGCAACATGCTACTTGCACCTCCATTGATGATAATGGTCATGAAATTGAAGAGCTTGATCTTGAGCTTCGTTTAGGGAACAAGCCAACACCAACTTGA 768 0.4076 MATDIGLLSNMTQIQKSSQSQSQQHQPNPNSNTTTTPSPSSSTWMWNPKQHHQQQQEQEDEDSWEVRAFAEDTRNIMNTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSHPSSPFINIPPQDLVANAGLCLLYHLPNPNNNAFPSYNSSSPNGESPSTFLSISSSTSYPPNNLMMQMQTCSPSFNFQVDNSARLINNSISSFSSKVDQQHATCTSIDDNGHEIEELDLELRLGNKPTPT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00584 255 Gene3D Classic Zinc Finger 73 129 - -
Mepo5g00584 255 Pfam C2H2-type zinc finger 86 110 - -
Mepo5g00584 255 MobiDBLite consensus disorder prediction 1 63 - -
Mepo5g00584 255 MobiDBLite consensus disorder prediction 1 52 - -
Mepo5g00584 255 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mepo5g00584 255 SUPERFAMILY beta-beta-alpha zinc fingers 83 113 IPR036236 -
Mepo5g00584 255 PANTHER OS07G0101800 PROTEIN 58 252 - -
Mepo5g00584 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Mepo5g00584 255 SMART c2h2final6 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00584 Mepo-Chr5 5249111 5249960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00584 41 252 C2H2 Transcription Factor Family AT4G17810 40.271 2.10e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo5g00584 zf-C2H2_6 5.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00584 - - tpra:123908941 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00584 5 5249111 5249960 Mepo5g00584 5 5249111 5249960 ECH