Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00579 ATGGGAGGAGCTTCACTGCCTCCGGGTTTTCGTTTCCATCCAACCGATGAAGAGTTGATAGGATATTACCTAAAAAGAAAAGTTGAGGGGCTTGAAATTGAGCTTGAAGTTATACCTGTTATTGAATTCTACAAATTTGATCCTTGGGAGTTACCTGAGAAATCTTTCCTGCCAAAAAGAGATATGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGTTCAAGGACAAATAGAGCCACGAAAGCTGGCTACTGGAAAGCCACAGGAAAAGACAGGAAGGTTGTGTGTGAGCCCAGTCCATTCATTTCCACTGAGACTGTCACAGGTTACCGCAAGACCCTTGTTTTCTACTGTGGAAGAGCTCCTTTAGGTGATCGAACCAATTGGGTCATGCATGAATATCGCCTCAACGATGATCCTAGCCAAGGCTCGGAGGGTGCTTTTGCTTTGTGCCGAGTTATCAAAAAGAATGAGAAGGCAAATGATTCACAAGGGCAAGGAGGAAAGAGGGTTAGAGCTAATGATGGGAGCAATTCCATTTCAACCAATGGGAATGAGGTTTCTTGTCAGGCAAGTCAACTGTGCAGTGCCAGTGAGAGTCATTATTCAAGTCCTATTAGCTTCCAACGCAATGTCCCTCCTATGGCTGTATTTGACCAAGCTTCCTCTGATACCAATCTTACAACCTTCTGGCTCTCCCCTGACATGATTCTTGATTCTTCAAAGGACTATTCTCAAGGGCAATTACAAGATGTTGTTGCATGTTTTCCACAGCAACATGAGTTATTGAGTACAATGACACCTTGGCAATCATTTCAACATACTGAAATTTCACCTTGTTCATCCTACTCAAATTTTAATGCGGAAATTGAATTTCCTGACACTCTAAGCCAAATTGGTTGCATGTCACCTTACTCGGGACAAGGAAGTTTCATGGACTTGCCTTATGAATGCTATGATCAGATTCATTCATTCAGGGATCCAAATCAATTCTGA 1008 0.4276 MGGASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIEFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEPSPFISTETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLNDDPSQGSEGAFALCRVIKKNEKANDSQGQGGKRVRANDGSNSISTNGNEVSCQASQLCSASESHYSSPISFQRNVPPMAVFDQASSDTNLTTFWLSPDMILDSSKDYSQGQLQDVVACFPQQHELLSTMTPWQSFQHTEISPCSSYSNFNAEIEFPDTLSQIGCMSPYSGQGSFMDLPYECYDQIHSFRDPNQF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00579 335 MobiDBLite consensus disorder prediction 171 188 - -
Mepo5g00579 335 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Mepo5g00579 335 MobiDBLite consensus disorder prediction 163 188 - -
Mepo5g00579 335 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Mepo5g00579 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 224 - -
Mepo5g00579 335 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Mepo5g00579 335 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Mepo5g00579 335 FunFam Nac domain-containing protein 86 15 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00579 Mepo-Chr5 5181694 5184152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00579 1 295 NAC Transcription Factor Family AT4G17980 54.485 1.41e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo5g00579 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00579 - - adu:107487585 443.351