Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00562 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAAGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAGCAAAGCTTGAATCTATGGACTATAATGTTTCTACGTTCTACAATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGTCCCAAATGCTTCCATGTTGCTATAGTGGAGGTGAGTATAAACTGCCCTGACGGAGGTTTCAAATTTCTCGAGAATGCGAAAGACTTGCCAACCATTATGACTTCGAATAGTCAGTGCATAAACACAATGATGAAGTGCATCGCGCTTGGTGCAGTTGAGTTCCTCACTAGACCACTTTCTGAGGACAAGCTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGAGGCAAGCGCTCTGTCTGAATCGCTTAAACCGGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTCCAAACAGACAACACACTACATGAAAGTACAATGTCAATAGATTTAGATAAGGTGTCCAAGTTTAGTGACAATGAACACGAGCATTCTGCGGCAAGCGATAAATATCCGGCTCCTTCCACCCCGCAATTAAAACAAGGGGCAAGGTTAGTGGATGATGGTGATTGCCATGAGCAGACTAATTGCTCAATAGAAAAGGAAAGTGGGGAACATGACAGTGGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATTTGAATACTGAAAGTTCTCCTCAACCTACAAAACCTCTTATTAAGGAGGAAGAAGATTTTGCCAAGGGTAAGAGTGGTGCTTCATTGAATCCACAGAATAAAAATTTTCTCGGCGATGCTGGTGGTAATCCATCTCTGAATAAAACAAGTGTTTTTAACGATCCGTGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACAGCTGAGCTGCACAAAAAATTTGTGAAGGCGGTGGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGATGGTTTGACTAGGCATAATGTCGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATCATGCACACGGACGAAGATCGAAAATGGCCAAATCGAAGAGATCCTATGCAAAGGAACTATTGTACGCAAAGACCGATTATGGCCTATCCACCATATCATTCTAATCACACCTTTCCTCCAGCTCCTGCATATCCTATGTGGGGCCAACATGGAAGTCAAACAGCTGGTGTACCGATTTGGGGTCCTCCGGGTTATCCTCTATGGCAGCCTACAGAAAGTTGGCATTGGAAGCCATATCCGCCAGGGGTGCATGTGGATGCATGGGGCAACCCAATGTTGCCCCCGCCTCAAACTCATTGTATTCCTTACACTCAAAATATGGCTGGGTTGCACAACGCTAAAGCAGTGGATTATAGTTATCCGGCAGAGGAAGTGGTGGACAAGGCTGTGAAGGAGGCAATAAACAAGCCATGGCTACCTTTACCTATAGGCCTCAAACCTCCTTCAATGGATAGTGTGTTGGATGAACTTTCCAAACAAGGCATTCCTTTTAGCAAGAAGAGCAAGGGCTCTAGACCATGCTGA 1623 0.4344 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRAKLESMDYNVSTFYNENEALSAISSSPKCFHVAIVEVSINCPDGGFKFLENAKDLPTIMTSNSQCINTMMKCIALGAVEFLTRPLSEDKLKNIWQHVVHKAFNAEASALSESLKPVKESVESMLQLQTDNTLHESTMSIDLDKVSKFSDNEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDSGECKFVETSCENLNTESSPQPTKPLIKEEEDFAKGKSGASLNPQNKNFLGDAGGNPSLNKTSVFNDPCENKANRKKMKVDWTAELHKKFVKAVEQLGIDQAIPSRILELMKVDGLTRHNVASHLQKYRMHKRQIMHTDEDRKWPNRRDPMQRNYCTQRPIMAYPPYHSNHTFPPAPAYPMWGQHGSQTAGVPIWGPPGYPLWQPTESWHWKPYPPGVHVDAWGNPMLPPPQTHCIPYTQNMAGLHNAKAVDYSYPAEEVVDKAVKEAINKPWLPLPIGLKPPSMDSVLDELSKQGIPFSKKSKGSRPC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00562 540 Gene3D - 304 366 - -
Mepo5g00562 540 SUPERFAMILY Homeodomain-like 307 365 IPR009057 -
Mepo5g00562 540 Gene3D - 18 147 - -
Mepo5g00562 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 364 IPR017930 -
Mepo5g00562 540 FunFam Two-component response regulator 304 367 - -
Mepo5g00562 540 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 529 IPR044825 GO:0003700|GO:0045893
Mepo5g00562 540 NCBIfam myb-like DNA-binding domain, SHAQKYF class 308 363 IPR006447 GO:0003677
Mepo5g00562 540 SUPERFAMILY CheY-like 16 135 IPR011006 -
Mepo5g00562 540 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Mepo5g00562 540 Pfam Myb-like DNA-binding domain 311 360 IPR001005 -
Mepo5g00562 540 FunFam Two-component response regulator-like APRR2 17 142 - -
Mepo5g00562 540 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00562 Mepo-Chr5 5009979 5016269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00562 1 528 Response Regulator Gene Family AT4G18020 48.410 8.00e-139 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mepo5g00562 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00562 - - gmx:100784905 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00562 5 5009979 5016269 Mepo1g01712 1 16892914 16899327 PCT