Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00536 ATGAATCATCACAACATAACACCTATGAATTTTCAACAACTTCCTCATCTCTTCCTACAAGAGATTCCTACTTTGGGAAACTCCAGTGGAATGAAGGCTAATAGGAGTATTAAGAAGGAGGAGCCTAGTTGTGCACAAATGACAATCATTTATGATGGGAAAGTAATTGTGTTTGATGATGTTCCAGCTGATAAAGCCAAAGACATCATGGACTTTTCCACTAAAGGAATTACCAGTACTTCACAAAACCACAATAACAACTATGCTTACTCTTCATTTCTTGCTAGAAATTCTGCCAACAATTCTCTTCAAGACTGCTATCAAGTACCATCTATACCTGTTATATATGATTTACCAATGACTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGGAAGGATAGAATTGCTGCAAGGGCACCGTATCAAACAAGTAATCCAGCAGCATTCTTTAATAAGCCAATTAATGAATCCATGTCATGGCTATCCTTGGCACCACAATCACCGCAACACAAATCTGAATGTAGCTCCACCTCTGTGTTATTTTTGTAG 555 0.3802 MNHHNITPMNFQQLPHLFLQEIPTLGNSSGMKANRSIKKEEPSCAQMTIIYDGKVIVFDDVPADKAKDIMDFSTKGITSTSQNHNNNYAYSSFLARNSANNSLQDCYQVPSIPVIYDLPMTRKASLHRFLEKRKDRIAARAPYQTSNPAAFFNKPINESMSWLSLAPQSPQHKSECSSTSVLFL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00536 184 ProSiteProfiles Tify domain profile. 40 75 IPR010399 -
Mepo5g00536 184 SMART tify_2 40 75 IPR010399 -
Mepo5g00536 184 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 154 IPR040390 -
Mepo5g00536 184 Pfam Jas motif 119 144 IPR018467 -
Mepo5g00536 184 Pfam tify domain 42 71 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00536 Mepo-Chr5 4674562 4676350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00536 32 166 Tify Gene Family AT1G19180 40.000 8.07e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mepo5g00536 tify 6.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00536 K13464 - mtr:112421766 235.343