Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00502 ATGAGTATTGAAAAGGAAGAATTTGGTTTGAGCCTAAGTTTGAGCTTCCCTCAAAATCCACCAAATCCTCAATACCTTAATCTTATGTCTTCTTCAACTCCTTCTACTTTCAACAATCCTCAAAAACCTTCTTGGAACGATGTTTTTACTTCTTCAGATCATCGGGATTCGGAGACATGCAGAATCGAAGAACGACCTTTACTTCTCCGAGGAATCGATGTGAATCGGTTACCTTCTGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCACCAAACAGCACCGTTTCAAGTGTGAGTGGTAAAAGAAGCGAAAGAGAAGTTACAGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGATGCTGAAACTTCCAGGAAAAAACTTAGACTCACCAAAGACCAATCAATTATCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTGGCACTTGCAAAACAATTAGGGCTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAGGTAGATTGTGAATTTTTGAAAAGATGTTGTGAGAATCTAACGGATGAAAATAGACGGTTGCAAAAAGAAGTGCAAGAGTTAAGAGCATTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCAACAACACTTACCATGTGCCCCTCTTGTGAGCGTGTTGCTGTTCCATCATCTGCCGTTGATGCTGCCACGCGTCGTCATCCTATGGCTCCAAATCACCCTCGTACATTTCCTTTGGGACCATGGGCCACAGCTGCTCCTATACAACATAGGACGTTTGAGACACTCCGTCCTAGATCTTAA 885 0.4147 MSIEKEEFGLSLSLSFPQNPPNPQYLNLMSSSTPSTFNNPQKPSWNDVFTSSDHRDSETCRIEERPLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRRHPMAPNHPRTFPLGPWATAAPIQHRTFETLRPRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00502 294 SMART HOX_1 131 193 IPR001356 GO:0003677
Mepo5g00502 294 FunFam Homeobox-leucine zipper protein 18 119 194 - -
Mepo5g00502 294 MobiDBLite consensus disorder prediction 29 48 - -
Mepo5g00502 294 MobiDBLite consensus disorder prediction 29 52 - -
Mepo5g00502 294 MobiDBLite consensus disorder prediction 88 103 - -
Mepo5g00502 294 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Mepo5g00502 294 PRINTS Lambda-repressor HTH signature 169 185 IPR000047 GO:0003677
Mepo5g00502 294 PRINTS Lambda-repressor HTH signature 160 169 IPR000047 GO:0003677
Mepo5g00502 294 CDD homeodomain 133 190 IPR001356 GO:0003677
Mepo5g00502 294 Gene3D - 137 187 - -
Mepo5g00502 294 MobiDBLite consensus disorder prediction 104 134 - -
Mepo5g00502 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 260 - -
Mepo5g00502 294 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Mepo5g00502 294 SUPERFAMILY Homeodomain-like 124 190 IPR009057 -
Mepo5g00502 294 Coils Coil 188 225 - -
Mepo5g00502 294 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Mepo5g00502 294 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Mepo5g00502 294 Pfam HD-ZIP protein N terminus 4 107 IPR006712 GO:0005634
Mepo5g00502 294 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Mepo5g00502 294 MobiDBLite consensus disorder prediction 82 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00502 Mepo-Chr5 4363606 4365384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00502 1 294 Homeobox Transcription Factor Family AT4G17460 59.091 4.04e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo5g00502 HD-ZIP_N 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00502 K09338 - gmx:100787231 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00502 5 4363606 4365384 Mepo1g01649 1 16230525 16232394 PCT