Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00498 ATGGAACAAGTTTCTGTCTCTTCCTCCTCCATTGAAGATAACAAAACCAAAAACAAAGGTGATAATGGGAAGCACCCATTGTATCGTGGAGTAAGAATGCGTAGTTGGGGAAAATGGGTGTCAGAAATTAGAGAGCCCAAGAAAAAATCAAGAATTTGGCTAGGCACTTATCCAACACCCGAGATGGCAGCTCGAGCCCACGACGTTGCGGCCCAAGCCATTAAAGGCAGCTCGGCTTACCTCAATTTCCCCCAATTAGCTCAACAACTTCCGCGCCCAACCACTAATTCTCCTAAGGACATTCAAGCCGCTGCTGCTAAGGCAGCGGCTATGGGCTATCCCCATGAAGCCCAGGACCAGGCCCACGACATACAAGAAACGTTATGTGACGAGGATGATACATTCTACGACCTCCCTGATCTCTTACTAGATTCAAATAAGAGTTCAAATGAGTTTCATTATTCTTCCATGTCGTGGCTTGTGGCTGGAGCTGAATATCCAAACCCAAGTTTTGGGCTAGATGAGCCTTTCCCGTGGGAACCTTAG 546 0.4725 MEQVSVSSSSIEDNKTKNKGDNGKHPLYRGVRMRSWGKWVSEIREPKKKSRIWLGTYPTPEMAARAHDVAAQAIKGSSAYLNFPQLAQQLPRPTTNSPKDIQAAAAKAAAMGYPHEAQDQAHDIQETLCDEDDTFYDLPDLLLDSNKSSNEFHYSSMSWLVAGAEYPNPSFGLDEPFPWEP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00498 181 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Mepo5g00498 181 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Mepo5g00498 181 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mepo5g00498 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 144 - -
Mepo5g00498 181 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Mepo5g00498 181 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mepo5g00498 181 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Mepo5g00498 181 MobiDBLite consensus disorder prediction 14 28 - -
Mepo5g00498 181 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Mepo5g00498 181 MobiDBLite consensus disorder prediction 1 28 - -
Mepo5g00498 181 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Mepo5g00498 181 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00498 Mepo-Chr5 4324007 4324552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00498 15 177 AP2-EREBP Transcription Factor Family AT2G44940 47.418 5.54e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo5g00498 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00498 - - cam:101496929 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00498 5 4324007 4324552 Mepo1g01642 1 16132160 16133659 PCT