Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00456 ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCACCCCACTGATGAAGAACTTGTTGATCACTACCTCAGGAAAAAGATAGCTTCTAAAAGGATTGATCTTGATATCATTAAAGATGTCGACCTCTATAAGATTGAGCCGTGGGATCTACAAGAATTATGCAAAATAGGAAGTGATGAACAAACTGAATGGTACTTCTTCAGTCATAAAGACAAGAAGTATCCAACGAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCTAACCATATTTGTCTCATTGGAATGAGAAAGACTCTAGTCTTCTATAAAGGAAGAGCACCTAATGGTCAGAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACAAATGAAAATGGAACTACTCCTCAGGAAGAAGGATGGGTTGTGTGTAAAGTGTTCAAAAAACGAATAGCTACAACAATGAGGAAAATGGACGATTCACCATGTTGGTATGATGATCAAGTATCATTCATGCAATCAGATCTTGAATCTCCAAGTAGAGTTTCTTCTCATCACCCTTATAATGCATCATACCAACAGCAACAGCATTACCCTTGCAAACAAGAGTTGGATCAATTGCAATACAATATACACATTAATAATAATGATGCTAATAATTTCCTACAACTTCCACAACTAGAAAACCTCAATTCTCCTTTGCAATGCTCATTATCATCACATTCAATGACTCAAGAACAATATGGCCAGCAACAAAGTATGCAACTGGTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAACGAATGGAAAGCACTGGACAAATTTGTTGCTTCTAGGCTAAGTCAAGATCAAGATCATGCTTCTAAGGGAACTAGTAGTTATTGTAATGTGGCTGAACAAATTGCTTTGCTATCAAATGATGAATCCAAAAAATCAGAAACTGGTGGCCAGGAACATGTGACTTCAATCTCCAACTCCAATTGTCAGATTGACACGTGGAAATGA 1047 0.3754 MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWVVCKVFKKRIATTMRKMDDSPCWYDDQVSFMQSDLESPSRVSSHHPYNASYQQQQHYPCKQELDQLQYNIHINNNDANNFLQLPQLENLNSPLQCSLSSHSMTQEQYGQQQSMQLVYGGSNDLQAVVEQSNEWKALDKFVASRLSQDQDHASKGTSSYCNVAEQIALLSNDESKKSETGGQEHVTSISNSNCQIDTWK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00456 348 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Mepo5g00456 348 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Mepo5g00456 348 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Mepo5g00456 348 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Mepo5g00456 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 248 - -
Mepo5g00456 348 FunFam NAC domain-containing protein 16 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00456 Mepo-Chr5 3964275 3969170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00456 1 345 NAC Transcription Factor Family AT1G62700 55.224 5.85e-132 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo5g00456 NAM 5.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00456 - - mnt:21401962 435.647