Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo5g00453 | ATGAATGATCTAATGACAAAATCATTCACCAACTATGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCAAAAACAAGGTGGTGTTGAATTAACAAGATCTTCATTGACCCATTTGGAAACTGATATGAATTTGTTCTTGGAAGAAGCTGAGAAAGTGAGAACAGAAATGGGTGAAATTCGCGATATACTAACAAAGCTTGAACAAGCAAATGAAGAGAGCAAAAGTCTTCACAAAACTGAAGCTTTGAAAGCATTGAGGGAAAGAATTAATACTGATATTGTAACCGTTTTGAAGAAAGCCAAGTTTATTAGGACTCAACTTGAAGAAATGGATCGTGCTAATGCTGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCAATTTATAGAACTAGAATTGCTGTTACTAATGGCTTGCGTAAGAAACTCAAGGAGCTTATGATGGAGTTTCAGGCGCTGAGGCAGAAAATGATGAGTGAATACAAAGAAACAGTAGGGAGAAGGTATTATACAGTGACAGGGGAACATGCCGATGAAGAGATAATTGAGAAGATAATATCAAATGGAGATGATGAAAGTTTCTTAGGGAAGGCAATACAAGAACATGGAAGAGGAAAGGTTCTGGAAACTGTGGTTGAGATTCAAGACAGACATGATGCAGCAAAAGAGATTGAGAAGAGTTTGTTGGAACTTCATCAAATATTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAAAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGTACAAAGAATCTTCACGGTGCTAAACAGTATCAGAAAAGTAGCAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTTATTCTGGTTCTCATCATTGTCATTCCCATTGTCACTAGTTTCAGCAGTTCTTGA | 960 | 0.3656 | MNDLMTKSFTNYVDLKKAAMKDEVDLEAGLQKQGGVELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEQANEESKSLHKTEALKALRERINTDIVTVLKKAKFIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQALRQKMMSEYKETVGRRYYTVTGEHADEEIIEKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMCIGIILLLILVLIIVIPIVTSFSSS | 319 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo5g00453 | 319 | Coils | Coil | 57 | 87 | - | - | |
| Mepo5g00453 | 319 | CDD | SNARE_syntaxin1-like | 220 | 280 | - | - | |
| Mepo5g00453 | 319 | Pfam | Syntaxin | 53 | 256 | IPR006011 | GO:0016020 | |
| Mepo5g00453 | 319 | ProSitePatterns | Syntaxin / epimorphin family signature. | 227 | 267 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Mepo5g00453 | 319 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 47 | 178 | - | - | |
| Mepo5g00453 | 319 | FunFam | Syntaxin 132 | 214 | 314 | - | - | |
| Mepo5g00453 | 319 | SMART | tSNARE_6 | 216 | 283 | IPR000727 | - | |
| Mepo5g00453 | 319 | PANTHER | SYNTAXIN | 61 | 304 | IPR045242 | - | |
| Mepo5g00453 | 319 | Gene3D | - | 217 | 316 | - | - | |
| Mepo5g00453 | 319 | Pfam | SNARE domain | 258 | 309 | IPR000727 | - | |
| Mepo5g00453 | 319 | Coils | Coil | 146 | 173 | - | - | |
| Mepo5g00453 | 319 | CDD | SynN | 53 | 197 | IPR006011 | GO:0016020 | |
| Mepo5g00453 | 319 | SUPERFAMILY | t-snare proteins | 48 | 276 | IPR010989 | GO:0016020|GO:0016192 | |
| Mepo5g00453 | 319 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 221 | 283 | IPR000727 | - | |
| Mepo5g00453 | 319 | Gene3D | - | 50 | 178 | - | - | |
| Mepo5g00453 | 319 | SMART | SynN_4 | 45 | 172 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo5g00453 | Mepo-Chr5 | 3941919 | 3943596 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo5g00453 | 1 | 319 | SNARE and Associated Proteins | AT1G08560 | 65.312 | 1.85e-133 | 380 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo5g00453 | K08486 | - | gmx:100816016 | 503.827 |